Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01567 AGTTATCAATCGGAGGTTTTTCAAGTTGCAAGAAAAAAAAATACGATAGCAGTCATGGAAACTGGTTCTGGGAAGACCATGATTGCTGTGATGCTCATAAGAGAAATTGGCCTTGCCACTAAGTCGAGTGGTAAAAGGAAACTGTTGATTTTATTAGCACCAACTGTTCATCTCGTTCATCAGCAATTTAAGGTCATCAAAATTCATACGAATTTTGAAGTGGGGGAGTACTATGGAGCCAAAGGGGTTGATGAATGGCGTGCAGAGTGCTGGGACAAGGAAATAGATGAGCACGATGTGCTGGTTATGACTCCCCAAATTCTTTTAGATGCATTAAGAAAGGCATTTTTGAGCTTAGAGAAAGTATGCTTGATGATTATTGACGAATGCCATCGCGCCACTGGTAATCATCCTTATACAAAAATCATGAAGGAATTTTATTACAAATCCAAGGACAAACCAAAGATATTTGGAATGACTGCATCTCCTGTTGTAAGGAAGGGTGTCTCCTCTTCTATGGATTGTGAGAATCAAATATCAGATCTTGAAAGTATCTTGGATTCACAGATTTATACAGTCGAAGATAAGAAAGAGCTGGAAGTTTATGTTCCCTCTGCAAGAGAAACTTATATCTTTTATGAACAAGCAGAGTCCAGAAGTTTGGATCTGAAAGCTAGCATTGAAGCCTTATGGTTCAAGAATGATGCTTCGCTATCAATGTTGCACGATGTAGTTCGAAGTCGTTACAAGGACTTGGATGATAAGTTTAAGACATTGAGAAAGCGGCTTTCTAATGATCATTCTACAATATTGTATTGTCTTCATGAACTAGGAGTCGTGTGTGCGTATGAGGCTGTTCAAATGTGTCTGGAGCATACTCATACTGCTGTAGAGGAATGTGAAATTTATTGTCTAAGTTTGGCATTGTATAAAGATTATCTCGAGGAATTGTCAAGTATAATTGGGGAATCTTATGCTCTTGGGAAAGAAAGTGTATTCTCTTTTAGGAATGACTATTCAGTGGATTCAAGATACATATCTCCAAAACTATTTGCGCTTTTGCAACTTTTCAAATCCTTTGGAGAGGGTAGGCAAGTGCTGTGCCTTATTTTTGTCGAAAGAATTGTTGCAGCTAGAGTTATCAAACAATTTGTAACGAAAGTTACTGATTTATCACATTTTACAAGTTCTTATTTGACTGGATGTAATGCATCAACTGGCGCACTTCCTTCAAAAATGCAGAAGGAGACATTGGAATCATTTTGTTATGGGAAGGTTAATCTATTATTTGCTACTGATGTTGTTGAGGAGGGAATCCACATACCACAATGTTCCTGTGTTGTTCGATTCGACCTGCCTAAGACGGTTCGTAGTTATGTGCAATCTCGAGGACGGGCTCGACAAGTTAACTCTCAATATGTCCTTATGTTGGAGAGAGGAAATATGAAACATAGAGATCAACTATTTGATCTTATTAAAAGTGAGCACTCTATGATGGATGCAGCTATGAGTAGGGATCAGGACACATGGAATTTGAAACCATGTTCTCCTGTCGTGAAAAATGTGTATGTTGTGGAAGCAACTGGAGCAGCAGTTACTGCAGATTCTAGTGTCAGTCTTATACATCTATATTGTGAAAAGCTCCCTGGTGATAAGTATTTCACACCGAAGCCAATCTTTCAGATTTCGGATGTTGGTGGATCTTATAAGTGTAAACTGACCCTGCCTCCAAATGCACCTTTTCAGACTATAGTTGGTCCGTCTTGTAGGAGTTCTCATTTGTCTAAGCAGCTTGTGTGCTTGGAGGCATGTAAGAGACTGCACGAAGTGGGTGGGCTGGATGATCATTTCCTCCCCTGCACGGGAGACTCTTCAAAGTTTGATGTAATTGAAAAAACTACTAAACTGAGTGGTGCAGGTACTAAAAAAAGAAAGGAACTGCATGGAACAACTCAAATTCATGCATTGTCCGGATCGTGGGGAGAAAATCTTGATGGTGCTGGTTTTTATGCCTACAAATTTTCATTCTCCTGTAATGTTGTTGGCGAGTTTTATCCTGGGTTTGTACTTCTCCTGCAATCAAAGCTCGATGATGATGTGGGAAATATCGAACTGGAACTTTACTTGGTCTCAAAAATAGTCAAGGCTTCTGTTTTATCATGTGGAGAATTTCATATGAGTGCAGAGCAGATAATTAAATCAAAGGCCTTTCAAGAAATTTTTTTTACTGGAATGTTTGGAAGATTGTTTGCTGGATCAAAAACAGCTGGGACGCAAAGAGAATTTTTACTTCAGAAAGAAGCACCATCTCTTTGGAAACCATATAATTCATATTTCCTTTTACCGCTGCAAAGACTGAATGTGGCAAATGTGGATTCATGGGAAATAGATTGGACTGGTATCAGTTCTTGTGCTTCTATAATAGATTTTTTTATGGAAAACTCTTCATTAGGAGCTGATAATTTCTGTGGTGGGAAAGTGGAAAATTCAAACTTGAAAGAGAAAGATTGCAGTGTATCCAGTGTAATATCTTTTGCTAATTGTAATGTTGCTATAGAAGGCCTGAAAGATATTGTAGTATTGGCTATTCACACTGGAAGGATATATTCAATTGTGGAAGCTGTAAGAGGCACATCTGCGGAGAGCACTTTTGATGGAAAGCTAGATGGTACACCATCTGAATACACTACCTTTTCTGATTACTTCAACAAAAAGTATGGAATTGTATTGAAATATCCGAAACAGCCACTGCTGCGGTTAAAGCAAAGCCATAATCCGCATAATCTTCTTGTCAACTTCAATGATATAGGTGACGATACATTGAAATCTGGCATGGTTCCCAGAAAGCCACAGACGCATGTGAACATGCCACCAGAGCTTTTGTTCAGGATTGATATTCCAAGAGAAATTTTAAAGTCATCATATTTACTTCCATCTTTGATGCATCGTTTAGAGTCCCTGATGTTATCTAGCCAGCTGAGGAAGGAGATTGGTGGTCATGCAAGTAGCTTTAAAATATCAAGCCATTTGATTTTAGAAGCACTTACAACACTAAGATGTTGTGAAAGTTTCTCTATGGAGCGTTTGGAATTGCTCGGTGACTCTGTTTTGAAGTATGCTGTTAGCTGCCATCTCTATCTCAAACATTTTAACAAACATGAGGGACAGTTATCTGGCCTGCGGCAATTGGTTGTCTGCAATGCAAATTTACATAAATTGGGAACAAGACGTAATTTGCAGGGATATATACGTGATACTCCATTTGATCCACGTCGCTGGTGTGCACCCGGACAGCGTCGTACTCGTCACGTTCCTTGTAAATGTGAAGTTGATACTTTAGAAGTGCCTTTAGACTCCAAATTCCAAGTTGAAGACCCAAAACTTGTCTTGGGAATATGCTGTGACAAGGGTCACAGATGGATGATTTCAAAAACTATAGCTGATTGTGTTGAATCTCTCATTGGGGCTTATTATATTGATGGGGGGCTGGTTGCTGCATTACATGTGATGAAGTGGTTTGGTATAGATGCTGAACTTGATCCCCCATTATTATTTGATGCTATTGCAACTGCTACCCTGAGGTCATACATTCCAAAAATGGATGATATTGCAACCTTAGAATCAAAGATTGGATACCAGTTTGTTACCAAAGGGCTTTTGCTCGAGGCCATAACTCATGGGACTGAAGAAGAGCAAAGCCTTGGTTACTGTTACCAGAGGCTCGAGTTTCTTGGTGATTCAGTGTTGGACCTGCTTATTACTAGGCATCTTTTTCATAACCATAGCGAAATTGACCCTGGTGAAATGACAGACTTGCGCTCAGCTTCTGTCAGTAATGAAAATTTTGCTCAAGTGGCTGTGAGACATAAATTTCACCCTCATCTTCAACATTGCTCCTCGTTGCTCCTAAGCCAAATAACAGAATATGTTACACATTTACCTGAATCTCATGGTGGTGCGAGAACTCTCCATGGAACCAAGGTCCCTAAGGTTCTTGGAGATTTGGTCGAAAGTATTGCAGGGGCAATATTGATTGATAGTAAGCTCAATCTTGACGAAGTGTGGAGAATATATAAACCACTTTTGTCACCCATTGAGACCCCTGATAAACTTGAACTGCCACCTCTGCGCAAGTTGCACCAGTTATGTGACTCTCTCGGGTATTTTGTGAATGAAAAATGCACAAGAAAGGGAGAATTCGTGCGTGCTGAGCTTAGGTTACAGCTAAATGATATCCTCTTGATCGGGGAGGGATATGAGCGTAGCAGAAAAGTTGCCAAAGGACAAGCAGCTTCACATCTCTTGGATGAACTTAAGAAGAGGGGAATTTCATTCTCTTATGGTTCCAAGAAGAGAAAGATTTACGAAGATGTTGACGATTTGCTTTGCCAAGATACGAAGAATGATATCTCCTGCCAAAAAACTAATGCTGTAGCAATTAACATGAAAAAAGGAGGACCTCGAAACTCTCTCTTTAAGCTATGTAAGAGCCTTGATTGGCCAATGCCAACGTTCAAATCATCAGAACATAGATCAAGGACACCAATTGAATTTGATGAAGGTTCTGAAAAAAGAAAGGTATATAATAGTTTCCGGTCAAATGTGATCTTGCACATACCCAACTCAGGTAGCATTGAATGTGAAGGAGATGCTAAAGCAGACAAGAAGAGTTCACTCGATTCAGCTGCTGTGGCCTTGCTTTACGATCTTCATCGCCAGGGAAAAGTCATCGTCGGCGATCCCTGA 4746 39.78 SYQSEVFQVARKKNTIAVMETGSGKTMIAVMLIREIGLATKSSGKRKLLILLAPTVHLVHQQFKVIKIHTNFEVGEYYGAKGVDEWRAECWDKEIDEHDVLVMTPQILLDALRKAFLSLEKVCLMIIDECHRATGNHPYTKIMKEFYYKSKDKPKIFGMTASPVVRKGVSSSMDCENQISDLESILDSQIYTVEDKKELEVYVPSARETYIFYEQAESRSLDLKASIEALWFKNDASLSMLHDVVRSRYKDLDDKFKTLRKRLSNDHSTILYCLHELGVVCAYEAVQMCLEHTHTAVEECEIYCLSLALYKDYLEELSSIIGESYALGKESVFSFRNDYSVDSRYISPKLFALLQLFKSFGEGRQVLCLIFVERIVAARVIKQFVTKVTDLSHFTSSYLTGCNASTGALPSKMQKETLESFCYGKVNLLFATDVVEEGIHIPQCSCVVRFDLPKTVRSYVQSRGRARQVNSQYVLMLERGNMKHRDQLFDLIKSEHSMMDAAMSRDQDTWNLKPCSPVVKNVYVVEATGAAVTADSSVSLIHLYCEKLPGDKYFTPKPIFQISDVGGSYKCKLTLPPNAPFQTIVGPSCRSSHLSKQLVCLEACKRLHEVGGLDDHFLPCTGDSSKFDVIEKTTKLSGAGTKKRKELHGTTQIHALSGSWGENLDGAGFYAYKFSFSCNVVGEFYPGFVLLLQSKLDDDVGNIELELYLVSKIVKASVLSCGEFHMSAEQIIKSKAFQEIFFTGMFGRLFAGSKTAGTQREFLLQKEAPSLWKPYNSYFLLPLQRLNVANVDSWEIDWTGISSCASIIDFFMENSSLGADNFCGGKVENSNLKEKDCSVSSVISFANCNVAIEGLKDIVVLAIHTGRIYSIVEAVRGTSAESTFDGKLDGTPSEYTTFSDYFNKKYGIVLKYPKQPLLRLKQSHNPHNLLVNFNDIGDDTLKSGMVPRKPQTHVNMPPELLFRIDIPREILKSSYLLPSLMHRLESLMLSSQLRKEIGGHASSFKISSHLILEALTTLRCCESFSMERLELLGDSVLKYAVSCHLYLKHFNKHEGQLSGLRQLVVCNANLHKLGTRRNLQGYIRDTPFDPRRWCAPGQRRTRHVPCKCEVDTLEVPLDSKFQVEDPKLVLGICCDKGHRWMISKTIADCVESLIGAYYIDGGLVAALHVMKWFGIDAELDPPLLFDAIATATLRSYIPKMDDIATLESKIGYQFVTKGLLLEAITHGTEEEQSLGYCYQRLEFLGDSVLDLLITRHLFHNHSEIDPGEMTDLRSASVSNENFAQVAVRHKFHPHLQHCSSLLLSQITEYVTHLPESHGGARTLHGTKVPKVLGDLVESIAGAILIDSKLNLDEVWRIYKPLLSPIETPDKLELPPLRKLHQLCDSLGYFVNEKCTRKGEFVRAELRLQLNDILLIGEGYERSRKVAKGQAASHLLDELKKRGISFSYGSKKRKIYEDVDDLLCQDTKNDISCQKTNAVAINMKKGGPRNSLFKLCKSLDWPMPTFKSSEHRSRTPIEFDEGSEKRKVYNSFRSNVILHIPNSGSIECEGDAKADKKSSLDSAAVALLYDLHRQGKVIVGDP 1581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18648608 18672123 + Bpe009418.1 Bpe02g01567 99716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01567 1581 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 537 627 IPR005034 GO:0016891
Bpe02g01567 1581 Pfam PAZ domain 852 985 IPR003100 GO:0005515
Bpe02g01567 1581 Pfam DEAD/DEAH box helicase 2 162 IPR011545 GO:0003676|GO:0005524
Bpe02g01567 1581 ProSiteProfiles PAZ domain profile. 853 965 IPR003100 GO:0005515
Bpe02g01567 1581 PANTHER DICER-RELATED 4 1576 - -
Bpe02g01567 1581 SMART riboneu5 1218 1371 IPR000999 GO:0004525|GO:0006396
Bpe02g01567 1581 SMART riboneu5 1009 1182 IPR000999 GO:0004525|GO:0006396
Bpe02g01567 1581 Gene3D Ribonuclease III domain 990 1173 IPR036389 GO:0004525|GO:0006396
Bpe02g01567 1581 Gene3D Ribonuclease III domain 1194 1367 IPR036389 GO:0004525|GO:0006396
Bpe02g01567 1581 CDD RIBOc 1219 1369 IPR000999 GO:0004525|GO:0006396
Bpe02g01567 1581 CDD SF2_C_dicer 345 477 - -
Bpe02g01567 1581 ProSitePatterns Ribonuclease III family signature. 1239 1247 IPR000999 GO:0004525|GO:0006396
Bpe02g01567 1581 CDD RIBOc 1010 1182 IPR000999 GO:0004525|GO:0006396
Bpe02g01567 1581 ProSiteProfiles Ribonuclease III family domain profile. 1203 1348 IPR000999 GO:0004525|GO:0006396
Bpe02g01567 1581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 479 IPR027417 -
Bpe02g01567 1581 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 507 IPR001650 -
Bpe02g01567 1581 Pfam Helicase conserved C-terminal domain 353 467 IPR001650 -
Bpe02g01567 1581 Gene3D paz domain 841 962 - -
Bpe02g01567 1581 SUPERFAMILY RNase III domain-like 1201 1366 IPR036389 GO:0004525|GO:0006396
Bpe02g01567 1581 SMART helicmild6 374 469 IPR001650 -
Bpe02g01567 1581 Pfam Ribonuclease III domain 1027 1162 IPR000999 GO:0004525|GO:0006396
Bpe02g01567 1581 Pfam Ribonuclease III domain 1239 1347 IPR000999 GO:0004525|GO:0006396
Bpe02g01567 1581 SUPERFAMILY RNase III domain-like 989 1186 IPR036389 GO:0004525|GO:0006396
Bpe02g01567 1581 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 4 1576 - -
Bpe02g01567 1581 Gene3D - 1 229 IPR027417 -
Bpe02g01567 1581 SMART ultradead3 1 199 IPR014001 -
Bpe02g01567 1581 Gene3D - 1493 1572 - -
Bpe02g01567 1581 SUPERFAMILY PAZ domain 852 961 IPR036085 GO:0005515
Bpe02g01567 1581 CDD DEXHc_dicer 1 195 - -
Bpe02g01567 1581 SMART PAZ_2_a_3 837 989 IPR003100 GO:0005515
Bpe02g01567 1581 Pfam Dicer dimerisation domain 537 621 - -
Bpe02g01567 1581 ProSiteProfiles Ribonuclease III family domain profile. 990 1162 IPR000999 GO:0004525|GO:0006396
Bpe02g01567 1581 Gene3D Dicer dimerisation domain 532 629 IPR038248 -
Bpe02g01567 1581 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 6 181 IPR014001 -
Bpe02g01567 1581 Gene3D - 339 506 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01567 K11592 DICER1, DCR1; endoribonuclease Dicer [EC:3.1.26.-] - csv:101205038 2048.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01567 Bpe04g00456 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01567 Bpe-Chr2:18648608 Bpe09g00690 Bpe-Chr9:15457597 0 dispersed
Bpe02g01567 Bpe-Chr2:18648608 Bpe03g00781 Bpe-Chr3:27776583 7.80E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g179 . . . . Bpe02g01567 . . . . . . . . . . . . Bhi04g01135 . . . . . . . . . . . . . . . Cone17ag0954 Cone20ag0298 . . . Cme03g01722 . . Bda01g01354 . . Bpe04g00456 Bma01g00904 . . . . . . . Car05g00890 . . . . . . . . . Cla08g00979 Cam08g1428 Cec08g1006 Cco08g1129 Clacu08g1133 . Cre08g0917 Lsi08g00826 . Chy03g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006008 1 2 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 2 1 2 1 1 1 2 2 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01567 Bpe_Chr02 FPKM 133.716431 131.197662 133.15683 132.9767 181.308029 176.621872 187.797729 217.914001 225.383728 201.981812