Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01572 ATGAATTCTTTTGTTTGCTGGGCGGTTTTGGTCGTTTTTCTTTCTGGGTTTTCGTCGGGAGAGTCTGAGAACACGACGACGCCGGTGAATGTGGGGTTGGTTCTTGATTTAGATGGAGAAGTTGGGAGGATGACGCTGAGCTGTATAGACATTGCTCTCTCCAACTTCTATTCCTCCCACGGTGGTTTCAAGACCAGGCTCGTGCTTAATACCAAAAACTCCATGAAAGACGTTGTCGGAGCAGCTGCTGCAGGCTTAGATCTTATGAAGAATGCAAAGGTGGAAGCTATAATCGGACCGGTGAGTTCAATGCAGGCTAAGTTCTTGATTGAACTCGGAGATAAAGCTCAGGTTCCTATTATTTCATTTTCAGCCACGAGCTCTTTGCTAACAACTCTTGGGAGTTCATATTTTTTCCGCATCGCGCAAAACGACTCGTCTCAAGTTCAACCCATTTGTTCAATTCTCAAAGCTTTTCGGTGGAGAGAGGTCGTGCCTATCTACGTAGATAATGCGTTTGGGCAGGGAATTATACCCTACTTGGCCGATGCATTGCAGAACATAGACGCTCTCATGCCTTATAGAAGTGCCATTCCTTCGTCAGCCTCTGATGATCAAATTGCAGCAGAGCTATACAAGCTGATGAGCATGCAAACTAGGGTTTTTGTCCTCCATCTCCTGCCTAGTCTGGCTTCAAGGATTTTTAAAATGGCGAAAGATATTGGGATGATGAGCGAAGGCTATGTTTGGATCATGACCGATTCTATCACTAATCTTTTGACTCAAATAGATGAGTCCGATTTCGACTCGATGCAAGGGGTGTTGGGCGTGAAGACTTACATTCCGAGAACGATCGAGCTAGATGATTTCAAAGTGAGATGGACAAGAAAGTTTCGGCAAGATAATCCGACCTATCTCAATGCTCAACTGAATGTTTTTGGATTGTGGAGTTATGATGCGGCTTGGGCACTAGCCATGGCTGTCGAGGCAGCCCTTTCGACTTCAAACCTTGGCTATCAAAAATCTAATAGCTCGACCAATGGAACTGATCTGGACACTTTCGGGGTTTCTCTGAACGGCCCGAGAATTCGCGATGAGCTGTCAAAAACGACATTTACAGGCCTTAGCGGGAATTTTAGCCTTGTCGATGGCCAATTGCAGTCTACAACTTTTGAAATAGTGAATATAAACGGTCACATAGGGAGACCCATTGGATATTGGACACCCAAAACTGGTCTCTCAAAAAGTTTGGGTTCATCTTCTTCGGCTGGAGCAACTCTAGGGACAATCCTATGGCCAGGAGATTCTACTTCAATTCCTAAGGGATGGGAGATTCCAACAAATGGGAAGAAACTGAGAGTAGGAGTTCCTTTCAAGGACGGATTCAGCGAATTTGTGAAAATAACAAATGATTCCATCTCGAATGCTACAACCGTCACAGGATACTGCATCGACATCTTCAATGCAGTTCTCGAGGAGTTACCTTACGCCATTGTTCCGGACTTCATCCCGTATAACCCCCCTAATTATACATATGATGATTTGATCAACCAAGTCAAACTCGGGAACTTCGACGCAGTAGTGGGCGATGTGACGATCGTTTGGCATAGATCTCTGGTCATAGATTTTACGTTGCCATACACAGAATCAGGGGTGATAATGGTGGTACCGATGACAGACAGCTCGAAGAAGAATGCATGGGTGTTCTTGCGGCCTCTGTCGTGGGATCTTTGGGTGACAAGTGGTTGCTTCTTCGTCTTCATCGGCTTCGTCGTTTGGGTTTTAGAGCACAGAATAAATGAAGATTTCAGGGGGCCCTGGACTCATCAGCTGGGCACCAGTCTCTGGTTCTCCTTCTCCACCATGGTTTTTGCGCATAGGGAGACAGTGGTTAGCAATTTCGCTCGATTCGTGGTGGTAATATGGTTCTTCGTCGTGCTTATACTGACCCAGAGTTACACTGCCAGTTTAACCTCGCTTCTCGTCCAACAGCTACAACCTGCTGTAACAGATGTGGATCAACTTTTGAAGAGCAAGGAAAGAGTCGGCTACCAAGATGGGTCTTTTGTCCGTGGAATTCTGATATCCTTAAAATTTGACCCTGACAAGCTTGTAAGCTATGGTAGTCCAGAAGAATTAGATGAACTTCTTTCCAAAGGAAGCGCCAATGGCGGCATTAGAGCAGCATTTGACGAAATTCCCTACATGAAGCTTTTTCTTTCCAAATACTGTTCAAAATATACCACTGGTAATCCTTCTTATAAAGCAGACGGGTTCGGATTTGCATTTCCTTTAGGCTCCCCACTAGTGGCTGATATATCAAGGGGAATACTGAACGTAACAGAGGGAGACCAGATGAACCAGATCGAAAAGAAATGGTTAGGTCAACGGAGCTCCTGCTCATCTTCCAGTCCCGATGTTAGGTCAACGAGTCTCAATCTCAGTAACTTTTGGGGCCTTTTTCTCATTGCTGGAACGGCTTCGGCGTTAGCCCTAATTTCATGCGCCATAAGTTTTCTTTACAAGCAAAGGGATCTTGTCCTCCGAAAGGACTCAAGCACTTCGATCTGGAACAGAATCAAAACAGTATTAAGAGTATACAACCAGAGAGATCTCACCTCTCATACTTTCAAAAATAGGAATATAAACGAACGAAGGGGGATTAGCACCGGTAATGGGGGACAAGGTTTTGAGGTGGCCTCACCAGAATCACATTTCATCCAAAGTCCGTCGGACTATCCAATCACTACGGAGGGGACTGCTCAGTTTTTCGCAGGGCAAGAAAGATTTTCGTATGAGGCCGGCGAACCGAGCCACAGCGCCGGAGCTTCCCCGAATATTATGCCGGCGATTGAGCTGTCCACTGGAAATCCAGATATTATCGCAAGATAA 2892 45.57 MNSFVCWAVLVVFLSGFSSGESENTTTPVNVGLVLDLDGEVGRMTLSCIDIALSNFYSSHGGFKTRLVLNTKNSMKDVVGAAAAGLDLMKNAKVEAIIGPVSSMQAKFLIELGDKAQVPIISFSATSSLLTTLGSSYFFRIAQNDSSQVQPICSILKAFRWREVVPIYVDNAFGQGIIPYLADALQNIDALMPYRSAIPSSASDDQIAAELYKLMSMQTRVFVLHLLPSLASRIFKMAKDIGMMSEGYVWIMTDSITNLLTQIDESDFDSMQGVLGVKTYIPRTIELDDFKVRWTRKFRQDNPTYLNAQLNVFGLWSYDAAWALAMAVEAALSTSNLGYQKSNSSTNGTDLDTFGVSLNGPRIRDELSKTTFTGLSGNFSLVDGQLQSTTFEIVNINGHIGRPIGYWTPKTGLSKSLGSSSSAGATLGTILWPGDSTSIPKGWEIPTNGKKLRVGVPFKDGFSEFVKITNDSISNATTVTGYCIDIFNAVLEELPYAIVPDFIPYNPPNYTYDDLINQVKLGNFDAVVGDVTIVWHRSLVIDFTLPYTESGVIMVVPMTDSSKKNAWVFLRPLSWDLWVTSGCFFVFIGFVVWVLEHRINEDFRGPWTHQLGTSLWFSFSTMVFAHRETVVSNFARFVVVIWFFVVLILTQSYTASLTSLLVQQLQPAVTDVDQLLKSKERVGYQDGSFVRGILISLKFDPDKLVSYGSPEELDELLSKGSANGGIRAAFDEIPYMKLFLSKYCSKYTTGNPSYKADGFGFAFPLGSPLVADISRGILNVTEGDQMNQIEKKWLGQRSSCSSSSPDVRSTSLNLSNFWGLFLIAGTASALALISCAISFLYKQRDLVLRKDSSTSIWNRIKTVLRVYNQRDLTSHTFKNRNINERRGISTGNGGQGFEVASPESHFIQSPSDYPITTEGTAQFFAGQERFSYEAGEPSHSAGASPNIMPAIELSTGNPDIIAR 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18705734 18711366 + Bpe009421.1 Bpe02g01572 99721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01572 963 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 28 885 - -
Bpe02g01572 963 PANTHER GLUTAMATE RECEPTOR 2.9 28 885 - -
Bpe02g01572 963 CDD PBP1_GABAb_receptor_plant 30 409 IPR044440 -
Bpe02g01572 963 MobiDBLite consensus disorder prediction 934 963 - -
Bpe02g01572 963 Gene3D - 451 565 - -
Bpe02g01572 963 Gene3D - 353 450 - -
Bpe02g01572 963 Pfam Bacterial extracellular solute-binding proteins, family 3 477 796 IPR001638 -
Bpe02g01572 963 Gene3D - 566 687 - -
Bpe02g01572 963 CDD GluR_Plant 450 794 - -
Bpe02g01572 963 PIRSF IGluLR_plant 1 905 IPR017103 -
Bpe02g01572 963 SUPERFAMILY Voltage-gated potassium channels 577 670 - -
Bpe02g01572 963 Gene3D - 146 310 - -
Bpe02g01572 963 SMART GluR_14 451 796 IPR001320 GO:0015276|GO:0016020
Bpe02g01572 963 Gene3D - 728 759 - -
Bpe02g01572 963 Gene3D - 760 793 - -
Bpe02g01572 963 SUPERFAMILY Periplasmic binding protein-like I 27 444 IPR028082 -
Bpe02g01572 963 SUPERFAMILY Periplasmic binding protein-like II 425 796 - -
Bpe02g01572 963 Pfam Receptor family ligand binding region 48 398 IPR001828 -
Bpe02g01572 963 Pfam Ligand-gated ion channel 797 826 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01572 Bpe-Chr2:18705734 Bpe14g00707 Bpe-Chr14:5512767 1.05E-166 dispersed
Bpe02g01572 Bpe-Chr2:18705734 Bpe02g01573 Bpe-Chr2:18722563 0 tandem
Bpe05g00088 Bpe-Chr5:1514342 Bpe02g01572 Bpe-Chr2:18705734 0 transposed
Bpe11g00455 Bpe-Chr11:3534722 Bpe02g01572 Bpe-Chr2:18705734 3.91E-117 transposed
Bpe14g00389 Bpe-Chr14:3656201 Bpe02g01572 Bpe-Chr2:18705734 0 transposed
Bpe14g00292 Bpe-Chr14:2886312 Bpe02g01572 Bpe-Chr2:18705734 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01572 K05387 - pop:18107523 1066.99