Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01573 ATGAGCATGCAAACTAGGGTTTTTGTCCTCCATCTCCTGCCTAGTCTGGCTTCAAGGATTTTTAAAATGGCGAAAGATATTGGGATGATGAGCGAAGGCTATGTTTGGATCATGACCGATTCTATCACTAATCTTTTGACTCAAATAGATGAGTCCGATTTCGACTCGATGCAAGGGGTGTTGGGCGTGAAGACTTACATTCCGAGATCGATCGAGCTAGATGATTTCAAAGTGAGATGGACAAGAAAGTTTCGGCAAGATAATCCGACCAATCTCCATGCTCAACTAAATGTTTTTGGACTGTGGAGTTATGATGCGGCTTGGGCATTAGCCATGGCTGTCGAGGCAGCGTTTTTTACTTCAAACGTTGGCTATCAAAAATGCAATAGCTCAACCAATGGAACCGATGTTGACACTGTGGGGATTTCTTTGAACGGCCAGAGAATTCGTGACGAGCTGTCCAAGACGACATTTAAAGGCCTTAGCGGGAACTTTAGCCTTGTCGACGGCCAATTGCAGTCTACAACTTTTGAAATAGTGAATATAAATGGTCATATAGGGAGACCCATTGGATATTGGACACCCAAAACTGGTCTCTCAAAAAGTTTGGGTTCATCTTCTTCGGCTGGAGCAACTCTAGGGACAATCCTATGGCCAGGAGATTCTACTACAATTCCAAAGGGATGGGAGATGCCAACAAATGGGAAGAAACTGAGAGTAGGAGTTCCTTGCAAGGACGGATTCAGTGAATTTGTGAAAATAACAAATGATTCCATCTCGAATGCTACAACCGTCACAGGATACTGCATCGACATATTTAATGCAGTTCTTGAGGAGTTACCTTACGCCATTGTTCCCGACTTCATCCCGTATAACCCCCCTAATTATACGTACGACGATTTGATCAACCAAGTCAAACTCGGGATCTTCGACGCAGTAGTGGGGGATGTGACGATCGTTTGGCATAGATCTCTGGACGTAGATTTTACGTTGCCATACACAGAATCAGGGGTGATAATGGTGGTACCGATGACAGACAGCTCGAAGAAGAATGCATGGGTGTTCTTGCGGCCTCTGTCGTGGGATCTTTGGGTGACAAGTGGTTGCTTCTTCGTCTTCATCGGCTTTGTCGTTTGGGTTTTAGAGCACAGAATAAATGAAGATTTCCGGGGGCCCTGGTCTCATCAGCTGGGCACCAGTCTCTGGTTCTCCTTCTCCACCATGGTTTTTGCTCAGAGGGAGAGAGTGGTTAGCAATTTCGCTAGATTCGTAGTGCTACAACCTGCTGTAACAGATGTGGATCAACTTTTGAAGAGCAAGGAAAGAGTCGGCTACCTAGATGGTTCTTTTGTCCGTGGAATTCTGATATCCTTAAAATTTGACCCTGACAAGCTTGTAAGCTATGGTAGTCCAGAAGAACTAGATGAACTTCTTTCCAAAGGAAGCGCCAATGGCGGCATTGCAGCAGCATTTGACGAAATTCCCTACATGAAGCTTTTTCTTTCCAAATACTGCTCAAAATATACCACTGGTAATCCTTCTTATAAAGCAGACGGGTTCGGATTTGCATTTCCTTTAGGCTCCCCACTTGTGGCTGATATATCAAGGGGAATACTGAACGTAACAGAGGGGAGACCAGATGAACCAGATCGAAAAGAAATGGTTAGGCCAACGGAGCTCCTGCTCATCTTCCAGTCCCGATGTTAG 1707 45.05 MSMQTRVFVLHLLPSLASRIFKMAKDIGMMSEGYVWIMTDSITNLLTQIDESDFDSMQGVLGVKTYIPRSIELDDFKVRWTRKFRQDNPTNLHAQLNVFGLWSYDAAWALAMAVEAAFFTSNVGYQKCNSSTNGTDVDTVGISLNGQRIRDELSKTTFKGLSGNFSLVDGQLQSTTFEIVNINGHIGRPIGYWTPKTGLSKSLGSSSSAGATLGTILWPGDSTTIPKGWEMPTNGKKLRVGVPCKDGFSEFVKITNDSISNATTVTGYCIDIFNAVLEELPYAIVPDFIPYNPPNYTYDDLINQVKLGIFDAVVGDVTIVWHRSLDVDFTLPYTESGVIMVVPMTDSSKKNAWVFLRPLSWDLWVTSGCFFVFIGFVVWVLEHRINEDFRGPWSHQLGTSLWFSFSTMVFAQRERVVSNFARFVVLQPAVTDVDQLLKSKERVGYLDGSFVRGILISLKFDPDKLVSYGSPEELDELLSKGSANGGIAAAFDEIPYMKLFLSKYCSKYTTGNPSYKADGFGFAFPLGSPLVADISRGILNVTEGRPDEPDRKEMVRPTELLLIFQSRC 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18722563 18724601 + Bpe009422.1 Bpe02g01573 99722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01573 568 SUPERFAMILY Periplasmic binding protein-like II 211 543 - -
Bpe02g01573 568 Gene3D - 352 427 - -
Bpe02g01573 568 SUPERFAMILY Periplasmic binding protein-like I 2 229 IPR028082 -
Bpe02g01573 568 Gene3D - 237 351 - -
Bpe02g01573 568 Gene3D - 1 96 - -
Bpe02g01573 568 Pfam Receptor family ligand binding region 2 184 IPR001828 -
Bpe02g01573 568 CDD GluR_Plant 236 544 - -
Bpe02g01573 568 Pfam Bacterial extracellular solute-binding proteins, family 3 263 543 IPR001638 -
Bpe02g01573 568 Pfam Ligand-gated ion channel 360 426 IPR001320 GO:0015276|GO:0016020
Bpe02g01573 568 Gene3D - 140 236 - -
Bpe02g01573 568 SMART GluR_14 237 547 IPR001320 GO:0015276|GO:0016020
Bpe02g01573 568 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 545 - -
Bpe02g01573 568 PANTHER GLUTAMATE RECEPTOR 2.9 1 545 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01573 Bpe-Chr2:18722563 Bpe14g00389 Bpe-Chr14:3656201 2.67E-151 dispersed
Bpe02g01572 Bpe-Chr2:18705734 Bpe02g01573 Bpe-Chr2:18722563 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01573 K05387 - pop:18107174 681.789