Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01593 ATGGCAATTCATTTTGAAAATAATATAAATAGATTGCATGGGAGCAGAGCTCCATGCACAGAAGAATTTCAAACTATGACCAGAAAGAAGGTGACGCTTTCATTCATCTCCAATGATTCCTCAAGGAAAGCCACTTTCAAGAAGAGAAAGAAAGGTCTGATAAAGAAGCTGAATGAGCTGAGTACTCTCTGCGGAATCGAAGCCTGCGCCATGATTTACAGTCCGTTTGAAACTCTGCCGGAGGCATGGCCGTCTCCGGGTGGAGTTCAACGAGTTCTGTCTAGGTTCAGAGGACTGCCGGAAATGGATCAGAGTAGGAAGATGGTGAATCTGGAGAGCTTCATCCGGCAAAGGATCGCGAAAGCCAACGAACAGCTAAAGAAGCTGGTGAAGGAGAACAGAGAGAAGGAGATGACTCGGGTTATGTTTGACTGCCTCACCGGGAACTCTCTCCTGGGTTTAACGATGCTGGATTTGCGGGATTTAGGCTGGGTGGTTGATCAACATTTAAACGATGTTGGCCGGAGAGACGATTTCCTGACCAAACCCGTGGTTCAAAATGAAAATCAAGTTCTGGCTGCATTGCCGCCGCCATTGATGGAAGGTGGGGAAGAAATAATGCAGGGATATGGAGGTCAAAATATGGAGACAATGGAAGGAATGCAAAGATCGCAGCCATGGAATCCGGAGACTATGAACTCGAGTCAAGATCATGATCAAACGATGGGGTTTAACGTTGACGATATGATACTTCCATTTGAAGATGCAAACAACAGCTCCTTTTGGTCTCCATTGTCGCCATGA 804 46.14 MAIHFENNINRLHGSRAPCTEEFQTMTRKKVTLSFISNDSSRKATFKKRKKGLIKKLNELSTLCGIEACAMIYSPFETLPEAWPSPGGVQRVLSRFRGLPEMDQSRKMVNLESFIRQRIAKANEQLKKLVKENREKEMTRVMFDCLTGNSLLGLTMLDLRDLGWVVDQHLNDVGRRDDFLTKPVVQNENQVLAALPPPLMEGGEEIMQGYGGQNMETMEGMQRSQPWNPETMNSSQDHDQTMGFNVDDMILPFEDANNSSFWSPLSP 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18858285 18859176 + Bpe009440.1 Bpe02g01593 99742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01593 267 CDD MADS_SRF_like 27 110 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bpe02g01593 267 ProSiteProfiles MADS-box domain profile. 26 74 IPR002100 GO:0003677|GO:0046983
Bpe02g01593 267 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 26 240 - -
Bpe02g01593 267 SUPERFAMILY SRF-like 26 110 IPR036879 GO:0003677|GO:0046983
Bpe02g01593 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 35 75 IPR002100 GO:0003677|GO:0046983
Bpe02g01593 267 PANTHER SERUM RESPONSE FACTOR HOMOLOG 26 240 - -
Bpe02g01593 267 PRINTS MADS domain signature 63 84 IPR002100 GO:0003677|GO:0046983
Bpe02g01593 267 PRINTS MADS domain signature 28 48 IPR002100 GO:0003677|GO:0046983
Bpe02g01593 267 PRINTS MADS domain signature 48 63 IPR002100 GO:0003677|GO:0046983
Bpe02g01593 267 Coils Coil 112 139 - -
Bpe02g01593 267 Gene3D - 38 122 IPR036879 GO:0003677|GO:0046983
Bpe02g01593 267 SMART madsneu2 26 85 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01593 - - - pvy:116137794 249.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01593 Bpe-Chr2:18858285 Bpe10g00655 Bpe-Chr10:13185083 7.17E-69 dispersed
Bpe14g00319 Bpe-Chr14:3138320 Bpe02g01593 Bpe-Chr2:18858285 1.47E-103 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
Bpe11g01646 . 1 350 Type I MADS-box Gene Family AT2G03060 50.9 5.5e-92 334.7
Bpe10g00879 . 1 350 Type I MADS-box Gene Family AT2G03060 50.8 4.3e-89 325.1
Bpe15g00056 . 1 167 Type I MADS-box Gene Family AT5G60440 63.3 3.7e-51 198.7
Bpe10g00655 . 1 181 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-56 216.5
Bpe02g01593 . 26 180 Type I MADS-box Gene Family AT5G48670 64.7 8.8e-51 197.6
Bpe14g00319 . 1 157 Type I MADS-box Gene Family AT5G48670 59.5 5.3e-48 188.3
Bpe15g00056 . 5 161 Type I MADS-box Gene Family AT2G24840 53.5 7.0e-38 154.5
Bpe15g00449 . 2 223 Type I MADS-box Gene Family AT1G77950 52.8 7.9e-55 210.7
Bpe15g00449 . 2 219 Type I MADS-box Gene Family AT1G77980 58.0 9.4e-64 240.7
Bpe15g00449 . 2 277 Type I MADS-box Gene Family AT1G22130 51.2 3.1e-67 252.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20985 PF00319 SRF-TF 2.30E-17 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01593 Bpe_Chr02 FPKM 0.286306 0.254071 0.0 0.0 2.545281 1.909922 2.298397 16.311733 14.376978 13.178417