Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01593 ATGGCAATTCATTTTGAAAATAATATAAATAGATTGCATGGGAGCAGAGCTCCATGCACAGAAGAATTTCAAACTATGACCAGAAAGAAGGTGACGCTTTCATTCATCTCCAATGATTCCTCAAGGAAAGCCACTTTCAAGAAGAGAAAGAAAGGTCTGATAAAGAAGCTGAATGAGCTGAGTACTCTCTGCGGAATCGAAGCCTGCGCCATGATTTACAGTCCGTTTGAAACTCTGCCGGAGGCATGGCCGTCTCCGGGTGGAGTTCAACGAGTTCTGTCTAGGTTCAGAGGACTGCCGGAAATGGATCAGAGTAGGAAGATGGTGAATCTGGAGAGCTTCATCCGGCAAAGGATCGCGAAAGCCAACGAACAGCTAAAGAAGCTGGTGAAGGAGAACAGAGAGAAGGAGATGACTCGGGTTATGTTTGACTGCCTCACCGGGAACTCTCTCCTGGGTTTAACGATGCTGGATTTGCGGGATTTAGGCTGGGTGGTTGATCAACATTTAAACGATGTTGGCCGGAGAGACGATTTCCTGACCAAACCCGTGGTTCAAAATGAAAATCAAGTTCTGGCTGCATTGCCGCCGCCATTGATGGAAGGTGGGGAAGAAATAATGCAGGGATATGGAGGTCAAAATATGGAGACAATGGAAGGAATGCAAAGATCGCAGCCATGGAATCCGGAGACTATGAACTCGAGTCAAGATCATGATCAAACGATGGGGTTTAACGTTGACGATATGATACTTCCATTTGAAGATGCAAACAACAGCTCCTTTTGGTCTCCATTGTCGCCATGA 804 46.14 MAIHFENNINRLHGSRAPCTEEFQTMTRKKVTLSFISNDSSRKATFKKRKKGLIKKLNELSTLCGIEACAMIYSPFETLPEAWPSPGGVQRVLSRFRGLPEMDQSRKMVNLESFIRQRIAKANEQLKKLVKENREKEMTRVMFDCLTGNSLLGLTMLDLRDLGWVVDQHLNDVGRRDDFLTKPVVQNENQVLAALPPPLMEGGEEIMQGYGGQNMETMEGMQRSQPWNPETMNSSQDHDQTMGFNVDDMILPFEDANNSSFWSPLSP 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18858285 18859176 + Bpe009440.1 Bpe02g01593 99742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01593 267 CDD MADS_SRF_like 27 110 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bpe02g01593 267 ProSiteProfiles MADS-box domain profile. 26 74 IPR002100 GO:0003677|GO:0046983
Bpe02g01593 267 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 26 240 - -
Bpe02g01593 267 SUPERFAMILY SRF-like 26 110 IPR036879 GO:0003677|GO:0046983
Bpe02g01593 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 35 75 IPR002100 GO:0003677|GO:0046983
Bpe02g01593 267 PANTHER SERUM RESPONSE FACTOR HOMOLOG 26 240 - -
Bpe02g01593 267 PRINTS MADS domain signature 63 84 IPR002100 GO:0003677|GO:0046983
Bpe02g01593 267 PRINTS MADS domain signature 28 48 IPR002100 GO:0003677|GO:0046983
Bpe02g01593 267 PRINTS MADS domain signature 48 63 IPR002100 GO:0003677|GO:0046983
Bpe02g01593 267 Coils Coil 112 139 - -
Bpe02g01593 267 Gene3D - 38 122 IPR036879 GO:0003677|GO:0046983
Bpe02g01593 267 SMART madsneu2 26 85 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01593 Bpe-Chr2:18858285 Bpe10g00655 Bpe-Chr10:13185083 7.17E-69 dispersed
Bpe14g00319 Bpe-Chr14:3138320 Bpe02g01593 Bpe-Chr2:18858285 1.47E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20985 PF00319 SRF-TF 2.30E-17 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01593 - - pvy:116137794 249.98