Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01594 ATGTACCCGTTATTAAAGCCACTTCATGCTACCCGCAGAACTTCTCTTCATCGTTGCTCTAATCTCATAGACGTCTCCTTATCTTTTGGATTGTTCTCTTTTGCCAGTTCCATCCATGCCCAGTTGATCAAAATTGGACTGAATGTCGATACTTTTTTGGGGAATCGCTGTCTTGAGATGTATGTTCACTTTGGTCCAGTTGGTGATGCATGGAAGGTTTTCGAAGATATCAGGGAGAAGAATACCATATCTCGGAATATACTCTTGAAGGGTTTGTTGAGATTTGACCATATCGAACGAGCAAGCATCCTGTTTGATGAAATGCCACAAAGAGATGTTGTTAGTTGGAACTCCATGATTTCTGGCCTGAAGTCGTGTGGATTTAATGAATATGCAGTTTCCTTTTTTATGGAAATGCAAATAGCTGGATTTAGGCCAAGTGGGTATACATACTCAATTTTGGTCTCAATTGCTCAGTGTACTCGTCAAGGGAAGGAAATTCACGCCAGTATCATACGAACTGGTATGATTTTGCCAAATATAGTTCTTGGAAATTCGTTGATTGATATGTATGGACGGTTTGGCCTAATCGATTATGTGTTTAACGTATTTTACACGATGAAGAATGTGGATATTATCACTTGGAACTCTTTGATTTTTAGTTGCCATAGATCAGGTCTCGAAGAGTTGGCACTAGAACAGTTCTGTTTGATGAGATATACGGACCACTCGCCCGATCAATTCACGTTCTCCGCGGTGATTAGCGTTTGTTCTTGCTTGCAGAATTTGGAAATGGGTAAGCAAATCTTTGCCTTTTGCTTCAAAGTAGGATGTTTTTGTAATAGCATTGTCCTGAGTGCTCTTATTGACATGTTTTCCAAATGCAACAGCTTGGTTGATGCAATGAGACTCTTTGATGTACTAAATAAGCGGGATTTAGCCATTTGTAATTCGATGATTTCAAGCTATGCCCAACATGGTTTTGGCCACGATGGCTTACGGATGTTCGTAAGTGCCTTGAGGGACAACCTCCGGCCAAGTGAATTTACGCTAAGCAGTGTGTTGGGCTGTGTCTCAGTCTTCATGCCGACGGAATTGTGTATGCAAATTCATTCTTTTGTCGTAAAATTGGGATTTGAGTACGACCCTATTGTTGCCAGTTCACTAGTTGATATCTATGCGAAAGTTGGACTGATAGAAAGTGCGATAGCCATATTCAAGAACATGGAAGTGAAAGACTTAATATCATGGAATACGTTTCTTATGGGTTTGTCGACCAACGGTAGAGCATATGAGGTTGTACAAATTTTCAAAGAAGCTGTCGGAAAAGGCCTGCGAGTCGATGGTATAACTCTTTCTGTAGTTTTATTAGCCTGCAACTATGGTGGTTTTGACGAAGAAGGATTGACCATCTTCTCGGCACTGGAAAAAGATTATGGAATCGTGCCTGCCGATGAGCATTACGCTTGCATAGTGAACTTATTGGGTCGAGCTGGTAAACTCGAAGAAGCCATGGACATCATCTCAAAAATGCCGTATGTACCGAGTAGTACGATTTGGAGGTCTCTTCTCTGTGCTTGTACAGCTGATGGAGACTTGAAAATCATCGAAAGAGTTGCGGTGAGGGTAATGGAAATGGAACCTCGATCGGATCTTCCTCACGTTGTGTTGGCTCGAGCTTATCAGACGAGAGGGATGTGGGAAAGGATGATTCGGGCAATATATGCCATCAGACATAAATCTTCGGAGAAATCGAGTGGCTGCAGTTGGGTTGGAATGAAAAACATTGTCTGTGTTTTTAAGGACAGCCAATTGCACGTCAAATCAATGGAACATTCTCATTCGCCCTTTTATGTGGTCGTCGCCTATGATGCAACTAGGGATCACACCGAGAATGATCTTAAACTCACTGTCAATGCGATTCGAATGGTTGGCGACATTCTTCGCAGAGGTGCCACTCTTCTTGTTCTTGGAGTTCTTCATAAAGTTCCCCACCCCAGTCTATCTTCCTACGGAGCAAGTTGGCATTCGACTGCTCCACAGACTGTTGGAAGCCATAGCAAAGATGTATCCAAGCAGAGGGCATCAAAAGCGCCTATCCTTTGTTCTGCTTGTGGGACAATGAATGAACTGTCCATCATGGACTCCATGAAATTCAACTATATCGACATAAAGCTCGCCACTTCCAATTTTGCAAAGGAAAATTTATTAGGAGAGGGTGGATTTGGTCGTGTATTTAAGGGCGAGCTCAAAGACAGACAGCTCATTGCAGCTAAGGTTCGAAAAGAAGCAAGTTCTCAAGGATTTGCTCAATTTCAATCTGAGGTGCTCATCTTAAGTTTTGCTCGGCACAAGAACATTGTTATGTTGTTGGGTTATTGCTGCAAGGAAAACTTAAAAATTCTGGTTTACGAGTATATATGCAACAAATCTCTCGATTGGCATTTATTTAAATCGACAGAATCTGTTCTCGAATTACGGCAGAGGCATGATATAGCTGTTGGAACTGCGAAAGGACTACGATATCTGCACGAAGAGTGTCGTGATTTTGGCCTGGCCAAATGGAAGGTCAGAGAGGATCATCACGATTCGAGGATACTCGGGACATTAGGATATCTGGCTCCAGAATATGCAGAGAATGGTATTCTGTCGGTTCGGACAGATGTCTATGCATTTGGCATTGTGCTGTTGCAGCTAATATCGGGACGGAGAGTGGGCAATACGAAAGGAGAAGACAAACATTGTTCTTTACGGCAGTGGGCAGAGCCGTTGATTGAGAATCTAGAATTGCATGAATTGGTAGATCAACGGCTCGGAAAGACATACGGGACGTACCAATTATACCTCATGGCTAAAGCCGCGTCTTTATGTGTTAAGAGAAACCCGGACAACCGGCCTTCCATGGGAGAGGTACGAATATTTTTCTTACAAGAAACGAAATTTATAAGAGTTAATTATCGCAATAGATGA 2970 42.39 MYPLLKPLHATRRTSLHRCSNLIDVSLSFGLFSFASSIHAQLIKIGLNVDTFLGNRCLEMYVHFGPVGDAWKVFEDIREKNTISRNILLKGLLRFDHIERASILFDEMPQRDVVSWNSMISGLKSCGFNEYAVSFFMEMQIAGFRPSGYTYSILVSIAQCTRQGKEIHASIIRTGMILPNIVLGNSLIDMYGRFGLIDYVFNVFYTMKNVDIITWNSLIFSCHRSGLEELALEQFCLMRYTDHSPDQFTFSAVISVCSCLQNLEMGKQIFAFCFKVGCFCNSIVLSALIDMFSKCNSLVDAMRLFDVLNKRDLAICNSMISSYAQHGFGHDGLRMFVSALRDNLRPSEFTLSSVLGCVSVFMPTELCMQIHSFVVKLGFEYDPIVASSLVDIYAKVGLIESAIAIFKNMEVKDLISWNTFLMGLSTNGRAYEVVQIFKEAVGKGLRVDGITLSVVLLACNYGGFDEEGLTIFSALEKDYGIVPADEHYACIVNLLGRAGKLEEAMDIISKMPYVPSSTIWRSLLCACTADGDLKIIERVAVRVMEMEPRSDLPHVVLARAYQTRGMWERMIRAIYAIRHKSSEKSSGCSWVGMKNIVCVFKDSQLHVKSMEHSHSPFYVVVAYDATRDHTENDLKLTVNAIRMVGDILRRGATLLVLGVLHKVPHPSLSSYGASWHSTAPQTVGSHSKDVSKQRASKAPILCSACGTMNELSIMDSMKFNYIDIKLATSNFAKENLLGEGGFGRVFKGELKDRQLIAAKVRKEASSQGFAQFQSEVLILSFARHKNIVMLLGYCCKENLKILVYEYICNKSLDWHLFKSTESVLELRQRHDIAVGTAKGLRYLHEECRDFGLAKWKVREDHHDSRILGTLGYLAPEYAENGILSVRTDVYAFGIVLLQLISGRRVGNTKGEDKHCSLRQWAEPLIENLELHELVDQRLGKTYGTYQLYLMAKAASLCVKRNPDNRPSMGEVRIFFLQETKFIRVNYRNR 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18861195 18868433 + Bpe009441.1 Bpe02g01594 99743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01594 989 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Bpe02g01594 989 Pfam PPR repeat 387 412 IPR002885 -
Bpe02g01594 989 Pfam PPR repeat 488 511 IPR002885 -
Bpe02g01594 989 Pfam PPR repeat 316 338 IPR002885 -
Bpe02g01594 989 Pfam PPR repeat 185 209 IPR002885 -
Bpe02g01594 989 Pfam PPR repeat 415 445 IPR002885 -
Bpe02g01594 989 ProSiteProfiles Protein kinase domain profile. 731 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g01594 989 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Bpe02g01594 989 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Bpe02g01594 989 Gene3D Phosphorylase Kinase; domain 1 698 806 - -
Bpe02g01594 989 PANTHER OS03G0435200 PROTEIN 1 611 - -
Bpe02g01594 989 Gene3D Tetratricopeptide repeat domain 15 159 IPR011990 GO:0005515
Bpe02g01594 989 Gene3D Tetratricopeptide repeat domain 464 616 IPR011990 GO:0005515
Bpe02g01594 989 Pfam Pentatricopeptide repeat domain 210 257 IPR002885 -
Bpe02g01594 989 Pfam PPR repeat family 111 155 IPR002885 -
Bpe02g01594 989 Pfam Protein tyrosine and serine/threonine kinase 849 971 IPR001245 GO:0004672|GO:0006468
Bpe02g01594 989 Pfam Protein tyrosine and serine/threonine kinase 734 845 IPR001245 GO:0004672|GO:0006468
Bpe02g01594 989 PANTHER OS07G0578800 PROTEIN-RELATED 1 611 IPR045215 GO:0003723|GO:0009451
Bpe02g01594 989 ProSitePatterns Protein kinases ATP-binding region signature. 737 759 IPR017441 GO:0005524
Bpe02g01594 989 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Bpe02g01594 989 SUPERFAMILY Protein kinase-like (PK-like) 713 972 IPR011009 -
Bpe02g01594 989 Gene3D Tetratricopeptide repeat domain 160 264 IPR011990 GO:0005515
Bpe02g01594 989 Gene3D Tetratricopeptide repeat domain 363 463 IPR011990 GO:0005515
Bpe02g01594 989 Gene3D Tetratricopeptide repeat domain 265 360 IPR011990 GO:0005515
Bpe02g01594 989 Gene3D Transferase(Phosphotransferase) domain 1 808 983 - -
Bpe02g01594 989 TIGRFAM PPR: pentatricopeptide repeat domain 315 347 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01594 - - - qsu:111984994 729.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01594 Bpe-Chr2:18861195 Bpe11g01671 Bpe-Chr11:12913569 1.05E-95 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1175 . . . . . . . . Cmo04g02526 . . . Car01g01585 . . . . . . . . . . . Cla08g00648 . . . . . . Cone4ag1445 Cone7ag1489 . . Lsi04g01809 . . Cme03g00434 . . . Bda01g01381 Bpe02g01594 . . . . . . . . . . Cpe01g02090 . . . . . . . . . . . . . . . . . Chy03g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011857 1 2 0 0 1 1 1 1 1 1 1 1 1 0 1 1 2 0 1 1 1 1 1 1 1 1 2 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63190 PF07714 PK_Tyr_Ser-Thr 6.20E-06 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01594 Bpe_Chr02 FPKM 0.0 0.0 0.0 17.54314 0.0 0.0 0.0 0.0 0.0 0.0