Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01595 ATGTTACTTGGGGCCGGTGACAACAAAAGTAACGTTGAAGGTGGGGTAATAACTGAGTGGAAAGATATTCCTATGGAGCTCCTCTTGCAAATTGTATCTCCTTTAGGTGATCAGATGGTGATAGTTGCATCAGGCGTGTGCCGCGAGTGGAGGGACGCCATTTGCTCAGGCGTTACTAGTCTCTCTCTTGCATGGTGTAACAAAAATATGAACAGGTTGGTCCAATCTCTGGCTCCAAAATTCACAAGACTGCAAATTCTCATTCTACGACAGGGCAAGCCACAGCTTGAGGACGACTCTGTCGAAACTATTGCACATTTCTGTCATGATCTCCAGGTCTTGGACCTCAGCAAAAGCTTTAAGCTTAGTGATAATTCCCTATACACCTTGGGTCGTGGCTGTCCCAATCTCACGAAACTTAACATCAGTGGTTGTTCATCATTCAGTGGCGATGGACTGGTTTATCTCACTCGTTTCTGCAGAAAACTAAAAGTTTTGAATCTCTGTGGCTGCGTCAAAGCTGCATCTGACGTGGCATTGCAGGCCATTGGACATCATTGCAACCAATTACAGTCCGTAAATCTTGGATGGTGTGAAAATGTTAGTGATGTTGGCGTCATGAGTTTAGTGCTTGGCTGTCCTGATCTCAGAACGCTCGACCTGTGTGGCTGTGTTCTTATTACAGATGAAAGTGTGATTGCTCTGGCAAATGGGTGTCCATATCTAAGGTCTCTCGGGCTATATTATTGTCAGAACATCACCGACAGAGCAATGTATTCTTTGGCACAAAAGCGAGCAAAGAATAGAGGTGAGCCATGGCTATCTGTGAGCAGAAAAAATGTCGAGGATGGGCTTAGAGCTCTAAACATCAGCCAATGCACAGCTCTCACCCCTTCTGCAGTTCAAGCCCTCTGTGATTCATTTCCGGCCCTTCACACTTGCTCCGGTAGGCATTCTCTCATAATGAGTGGTTGTTTAAGCTTAACGTCTGTGCATTGCGCTTGTGCCGTCCAAGCTCATCGTAATTCTACCACTTACCCTCGTGTTGCTCAT 1053 45.96 MLLGAGDNKSNVEGGVITEWKDIPMELLLQIVSPLGDQMVIVASGVCREWRDAICSGVTSLSLAWCNKNMNRLVQSLAPKFTRLQILILRQGKPQLEDDSVETIAHFCHDLQVLDLSKSFKLSDNSLYTLGRGCPNLTKLNISGCSSFSGDGLVYLTRFCRKLKVLNLCGCVKAASDVALQAIGHHCNQLQSVNLGWCENVSDVGVMSLVLGCPDLRTLDLCGCVLITDESVIALANGCPYLRSLGLYYCQNITDRAMYSLAQKRAKNRGEPWLSVSRKNVEDGLRALNISQCTALTPSAVQALCDSFPALHTCSGRHSLIMSGCLSLTSVHCACAVQAHRNSTTYPRVAH 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18870171 18872426 + Bpe025157 Bpe02g01595 99744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01595 351 SUPERFAMILY RNI-like 54 262 - -
Bpe02g01595 351 Gene3D Ribonuclease Inhibitor 56 283 IPR032675 -
Bpe02g01595 351 Pfam F-box-like 21 55 IPR001810 GO:0005515
Bpe02g01595 351 SUPERFAMILY F-box domain 20 63 IPR036047 GO:0005515
Bpe02g01595 351 Gene3D - 19 55 - -
Bpe02g01595 351 PANTHER F-BOX SKP2A-LIKE PROTEIN 2 333 - -
Bpe02g01595 351 SMART LRR_CC_2 239 264 IPR006553 -
Bpe02g01595 351 SMART LRR_CC_2 282 307 IPR006553 -
Bpe02g01595 351 SMART LRR_CC_2 81 107 IPR006553 -
Bpe02g01595 351 SMART LRR_CC_2 187 212 IPR006553 -
Bpe02g01595 351 SMART LRR_CC_2 213 238 IPR006553 -
Bpe02g01595 351 SMART LRR_CC_2 160 186 IPR006553 -
Bpe02g01595 351 SMART LRR_CC_2 134 159 IPR006553 -
Bpe02g01595 351 SMART LRR_CC_2 108 133 IPR006553 -
Bpe02g01595 351 SMART LRR_CC_2 55 80 IPR006553 -
Bpe02g01595 351 Pfam Leucine Rich repeat 213 236 IPR001611 GO:0005515
Bpe02g01595 351 Pfam Leucine Rich repeat 186 209 IPR001611 GO:0005515
Bpe02g01595 351 Pfam Leucine Rich repeat 134 155 IPR001611 GO:0005515
Bpe02g01595 351 PANTHER UNCHARACTERIZED 2 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01595 K03875 SKP2, FBXL1; F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2) - mnt:21404709 544.273
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01595 Bpe04g00016 CCT
Bpe02g01595 Bpe14g00322 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01595 Bpe-Chr2:18870171 Bpe04g00016 Bpe-Chr4:171750 0 dispersed
Bpe14g00322 Bpe-Chr14:3150201 Bpe02g01595 Bpe-Chr2:18870171 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1177 . Blo12g01113 . Bda03g00025 . Bpe04g00016 Bma04g00023 . Cmo04g02528 Cmo15g00645 . . . . . . Cpe13g00654 Bhi04g01835 Tan11g1207 . . Hepe02g2748 . Lcy10g1301 Cla08g00651 Cam08g1078 Cec08g0664 Cco08g0775 Clacu08g0782 . Cre08g0589 . Cone7ag1488 Cone17ag0806 Cone20ag0411 . . . Cme03g00431 Blo17g00229 Blo18g00227 . Bda13g01543 Bpe02g01595 Bpe14g00322 Bma01g00879 Bma02g00287 . . . . . Car04g02327 Car15g00586 . . . . . . . . . . . . . . . . Lsi08g00510 . Chy03g00570 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004343 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01595 Bpe_Chr02 FPKM 48.470257 51.340855 76.650841 72.7463 44.518879 40.205349 45.451923 65.271317 68.570915 70.377586