Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01599 ATGGGTCGGATTTTGAGCTTGTGGGTTTGTGTTTTCTTGGCGGGATTTGGGGTTCCAACGAAGGGATTTGAATACCCAGTTGACGATCTGATTGTGAGATTGCCTGGTCAGCCTGAGGTTGGGTTTAAGCAGTTTTCTGGGTATGTTGATGTTGACTTGATAGCTGGGAGGAGTCTGTTTTACTATTTTGTGGAAGCAGATGAGAAAGCAGAAGAGAAACCACTCGCTCTTTGGCTCAATGGAGGTCCGGGCTGTTCTTCCATTGGCGGTGGCGCCTTCACAGAGTTTGGTCCATTTTATCCGACAGGCGATGGTCGAGGACTTAGAAAAAATTCCATGTCATGGAACCGAGCTGCGAATCTCCTCTTCGTTGAATCTCCTGCTGGAGTTGGATGGTCATACTCAAATACTACTTCGGATTATACTTGTGGCGATGCCTCTGCGGGTAAATCAAACAGAGCTCCTTTATTCAACCATTTCTTAGCTAAGGACATGCTTACATTCATGTCAAAATGGTACGACAAGTTTCCGCCTTACAAAACCAGACCTCTACTTCTCACTGGAGAAAGCTATGCAGGCCATTACATACCGCAGTTGGCGATCGCTATTCTGGACTATAATGAACAATCTAAAAGTTTCAAGTTCAACCTAAAAGGAGTTGCTATTGGGAACCCGTTGCTTAGACTGGATCGAGATGTCCCAGCCACGTACGAATTCTTCTGGTCACACGGTATGATATCAGACGAAATCGGCCTGACAATCATGAACAAATGCGATTTCGAGGACTACGTTTTTGCAAGTCCTCACAATGTGAGCGGTGTATGCAACGATGCAATCTCGAAAGCGAATAAAATCGTGGGTGATTACATAAACAATTACGATGTTATAGTCGATGTTTGCTACCCGTCCATTGTGCAGCAAGAGCTGAGATTGAAGAAAATGGCTACAAAGATAAGCCTTGGAGTCGATGTTTGTATGACTTACGAAAGGCGTTTCTATTTCAACCTTCCCGAGGTTCAAGCAGCTCTTCATGCCAATCGTACCAAATTGCCTTATAGCTGGTCCATGTGCAGTGGGGTACTAAATTACAGCGAAACAGATGGTAACATCAACATTCTTCCCCTGCTACAGAGGATAATTCAAAATCACATTCCGGTTTGGGTTTTCAGCGGAGATCAAGATTCCGTTGTGCCGTTATTGGGTTCTCGAACACTTGTCCGGGAACTTGCCCATGATCTTAAATTGACAATGACGGTCCCTTATGGAGCTTGGTTTCACAAGGGCCAGGTGGGAGGGTGGGCCACAGAATATGGAAATATACTAACATTTGCGACAGTGAGAGGAGCTGCTCATATGGTACCCTTTGCTCAGCCTTCAAGAGCTCTGCATTTGATTGTTGAGAGTGTCGGAGAAGGAGTGACAGATTTGAAACCAGGCGATCATGTTCTTCCCGTCTTCACCGGAGAATGTTTGGAATGTGCTCACTGTAAGTCCTCAGAGAGCAACATGTGTGATTTGCTGAGAATTAACACAGACAGAGGAGTGATGATTAGCGATGGCAAATCAAGATTCTCCATTAATGGCCGACCAATTTACCATTTTGTCGGGACTTCCACTTTCAGCGAATATACTGTCGTTCATGTTGGATGCCTCGCCAAAATCAACCCATCTGCGCCATTAGACAAAGTCTGTGTTCTTAGCTGTGGAATCTCCACTGGCTTTGGCGCCACAGTTAATGTTGCTAAGCCAACCAAAGGCTCAACCGTAGCCATCTTTGGCCTTGGGGCTGTAGGACTTGCAGCTGCCGAAGGGGCGAGAGTTTCAGGGGCTTCTAGGATAATCGGAGTTGATTTGAACTCTAGCAGATTTGAAGAAGCTAAGAAATTTGGAGTGACTGAGTTTGTCAACCCAAAAGACCATAAAAAACCAGTTCAAGAGGTTCTTGCCGAGATAACGAACGGAGGAGTCGATCGAAGCGTTGAGTGCACTGGGAATATAGATGCCATGATTTCAGCATTTGAATGTGTTCACGATGGGTGGGGTGTGGCTGTTCTTGTGGGCGTACCTCACAAAGATGCTGTTTTCAAAACACACCCCATGAATGTCCTGAATGAGAGGACTTTGAAGGGCACTTTCTTCGGAAACTACAAGCCTCGAACTGATCTTCCATCCGTCGTTGAAAAGTACATGAACAAGGAGCTTGAGTTGGAGAAGTTCATAACGCATCAAGTTCCGTTTGGAGAGATCAACAAGGCCTTTGATTATATGCTCAAGGGGGAGGGTCTAAGGTGTATTATTCGAATGGAAGACTGA 2313 45.48 MGRILSLWVCVFLAGFGVPTKGFEYPVDDLIVRLPGQPEVGFKQFSGYVDVDLIAGRSLFYYFVEADEKAEEKPLALWLNGGPGCSSIGGGAFTEFGPFYPTGDGRGLRKNSMSWNRAANLLFVESPAGVGWSYSNTTSDYTCGDASAGKSNRAPLFNHFLAKDMLTFMSKWYDKFPPYKTRPLLLTGESYAGHYIPQLAIAILDYNEQSKSFKFNLKGVAIGNPLLRLDRDVPATYEFFWSHGMISDEIGLTIMNKCDFEDYVFASPHNVSGVCNDAISKANKIVGDYINNYDVIVDVCYPSIVQQELRLKKMATKISLGVDVCMTYERRFYFNLPEVQAALHANRTKLPYSWSMCSGVLNYSETDGNINILPLLQRIIQNHIPVWVFSGDQDSVVPLLGSRTLVRELAHDLKLTMTVPYGAWFHKGQVGGWATEYGNILTFATVRGAAHMVPFAQPSRALHLIVESVGEGVTDLKPGDHVLPVFTGECLECAHCKSSESNMCDLLRINTDRGVMISDGKSRFSINGRPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCVLSCGISTGFGATVNVAKPTKGSTVAIFGLGAVGLAAAEGARVSGASRIIGVDLNSSRFEEAKKFGVTEFVNPKDHKKPVQEVLAEITNGGVDRSVECTGNIDAMISAFECVHDGWGVAVLVGVPHKDAVFKTHPMNVLNERTLKGTFFGNYKPRTDLPSVVEKYMNKELELEKFITHQVPFGEINKAFDYMLKGEGLRCIIRMED 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18891026 18903165 - Bpe009445.2 Bpe02g01599 99748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01599 770 SUPERFAMILY alpha/beta-Hydrolases 29 465 IPR029058 -
Bpe02g01599 770 CDD alcohol_DH_plants 465 767 - -
Bpe02g01599 770 Pfam Serine carboxypeptidase 36 467 IPR001563 GO:0004185|GO:0006508
Bpe02g01599 770 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 19 471 IPR001563 GO:0004185|GO:0006508
Bpe02g01599 770 Gene3D - 325 361 - -
Bpe02g01599 770 SUPERFAMILY GroES-like 465 575 IPR011032 -
Bpe02g01599 770 PANTHER CARBOXYPEPTIDASE 19 471 - -
Bpe02g01599 770 Gene3D - 573 711 - -
Bpe02g01599 770 ProSitePatterns Serine carboxypeptidases, serine active site. 186 193 IPR018202 GO:0004185
Bpe02g01599 770 Gene3D - 468 760 - -
Bpe02g01599 770 Gene3D - 372 467 - -
Bpe02g01599 770 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Bpe02g01599 770 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Bpe02g01599 770 PRINTS Carboxypeptidase C serine protease (S10) family signature 441 454 IPR001563 GO:0004185|GO:0006508
Bpe02g01599 770 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 197 IPR001563 GO:0004185|GO:0006508
Bpe02g01599 770 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 559 732 IPR036291 -
Bpe02g01599 770 Pfam Alcohol dehydrogenase GroES-like domain 465 551 IPR013154 -
Bpe02g01599 770 Gene3D alpha/beta hydrolase 27 301 IPR029058 -
Bpe02g01599 770 SUPERFAMILY GroES-like 718 767 IPR011032 -
Bpe02g01599 770 Pfam Zinc-binding dehydrogenase 596 721 IPR013149 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01599 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - jre:109021509 766.148
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01599 Bpe14g00328 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00613 Bpe-Chr2:3990572 Bpe02g01599 Bpe-Chr2:18891026 0 dispersed
Bpe02g01599 Bpe-Chr2:18891026 Bpe14g00811 Bpe-Chr14:6121585 1.66E-129 dispersed
Bpe15g01069 Bpe-Chr15:19939988 Bpe02g01599 Bpe-Chr2:18891026 1.38E-91 dispersed
Bpe05g00386 Bpe-Chr5:18142131 Bpe02g01599 Bpe-Chr2:18891026 6.90E-97 transposed
Bpe08g00906 Bpe-Chr8:11523507 Bpe02g01599 Bpe-Chr2:18891026 5.06E-95 transposed
Bpe14g00328 Bpe-Chr14:3202693 Bpe02g01599 Bpe-Chr2:18891026 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1208 . . . . . . . . . . . . Car01g00888 . . . . . . . . . . . . . . . . . . . . Cone17ag0800 Cone20ag0404 . . . . Blo17g00721 Blo18g00224 Bda08g01180 Bda13g01537 Bpe02g01599 Bpe14g00328 . Bma05g00197 Sed07g2855 Cmo01g01036 . . . . . . Cpe02g00894 Bhi09g01486 Tan01g3358 Cmetu01g1438 . Hepe03g1217 Mch11g1415 . Cla09g00911 Cam09g0963 Cec09g0968 Cco09g0974 . . Cre09g0932 . . Chy03g00638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002124 1 2 1 1 1 2 3 2 2 2 2 2 1 2 3 3 2 3 2 2 2 2 2 2 2 2 3 7 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01599 Bpe_Chr02 FPKM 0.117068 0.081569 1.32911 1.298944 0.398081 0.378847 0.623178 0.261283 0.132923 0.086734