Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01605 TTTCTTTTACAGGCTTTAGTAGCTTTGAAGAAGGGTGCTCAATTGCTTACATATGGCCGTAACGGAAAGCCTAAATTCTGTTCATTTAGACTCTCTAATGATGAATTGTCTTTGATCTGGATATCAAGTAGTGGTGAAAGAAGTTTGCAGCTAGCTTCCATCTCTAGAATTATTCCTGGACAAAGAACTCCCGTCGTTGAACGATATTTGCATCCTGAAAAGGATTATTTATCATTTTCTCTTATATACAACGGTGGAAAGAATTCTCTTGATCTGATTTGCAAAGATAAAGTTGAGGCTGAGGTCTGGATTGCAGGCCTTAAAGCGTTAATAGCATCTGGTCAAGGAGGTCGATCCAAAATTGATGGATGGAATGATGGTGGATTCTATCTCGATGATGGTAGTGATTTGACTTCAAATAGCGAGAGTGATAGCTCCAATTGTGCAACAAGAGATCTTAGCTCATCTGAGGTTTCTGCTGACCTTAACCATAATATATCTCCAAAGAGATTCAGGCCTGAGAATTCTGGACAATCAGAAAGATTAAATGTACCATCAAGCCACCCCAATATGCAAGTAAGAGGATATGGTTCGGATGCTTTTCGAGTTAGTGTTTCAAGCGCCCCCAGCACCTCAAGTCATGGTTCTGCCCCAGACGATTATGATGCTCTGGGTGATGTTTACATATGGGGCGAGTTTATCAGTGATAATGTGGTCAAGGTCGGGGCTGAGAAAAATACTAATTATGTGACCTTAAGAGCAGATGTGCTTCTTCCCAAGCTGTTAGAGTCCAATGTAGTATTGGATATTCACCATATAGCCTGTGGGGTCAGGCATTCTGCACTAGTCACAAGGCAAGGTGAAGTTTTTACGTGGGGAGAGGAATCTGGTGGAAGGCTTGGCCATGGTGTGAGAAAGAATGTCATTCGGCCTTGCATTGTTGAATCATTGGCTGCCATTAACGTCGATTTTGTTGCTTGTGGAGAGTTCCATACTTGTGCTGTTACAATGGCTGGGGAACTTTATACCTGGGGAGATGGCACACATTATGCAGGGCTTCTTGGCCATGGTAGTGATGTCAGTCATTGGATACCAAAGAGGGTTTCAGGTGCTCTTGAAGGACTGCAAATTGCTTCAGTGACATGTGGACCTTGGCATACAGCCTTGATAACATCAATGGGTCAGCTCTTTACTTTTGGTGATGGGACATTTGGTGTATTAGGTCATGGAGATAGAGAAAAAGTTTCATATCCTAGAGAAGTGGAATCTTTATCAGGCTTAAGGACAATTGCTGTTGCATGTGGGGTGTGGCATACTGCTGCCATTGTTGAAGTTATTATGACACAATCCAGTTCTAGTGTTTGTTCAGGGAAGTTATTTACTTGGGGTGATGGCGATAAGAATCGGTTGGGGCATGGAGACAAAGATCCGCGGCTTAAACCAACATGTGTACCGGCATTAATTGACTACAATTTTCACAAAATTGCTTGTGGCCACAGTATAACTGTTGGCTTAACCAAATCAGGACAAGTTTTCACTATGGGAAGCCCTGTTTATGGTCAGCTTGGGAATCCTCTTGCTGATGGGAAGTTACCATGCTTGGTAGAGGATAGGCTTGTGGGAGAATCCATTGAAGAAGTTGCTTGTGGTGCCTATCATGTTGCGGTACTAAGTCATAGAAATGAAGTTTATACGTGGGGAAAGGGTGCAAATGGAAGACTGGGTCATGGAGATGTTGAAGATCGAAAAATGCCAACTTTGGTTGAAGGTTTGAAAGAAAGACACGTCAAGTATATTTCTTGTGGTTCTAACTATATGGCAGCCATTTGTCTTCATAAATGGGTTCCAGGTGCTGAGCAGTCTCAGTGTTCTGCTTGTAGACAGGCCTTTGGATTTACACGAAAGAGGCACAACTGCTATAATTGTGGACTTGTGCACTGCCACTCATGCAGTTCCAAAAAAGCATTAAGAGCGGCACTGGCTCCTAGTTCTGGCAAAGGATACCGCGTATGTGATTCTTGTTATACAAAGTTAAACAAGGTATCTGAAGCTAGTAATAATGACAGGAGAAATGCAATACCTCGCCTTTCTGGTGTGAACAAGGATAGGTTAGAGAAGAGAGAGTTTCATGTGTCTGATTCTATGCCTTCCAATATGGATTTAATAAAGCAGTTAGATAGCAAAGCAGCCAAACAAGGAAGGAAGGCAGCGGATACATTCTCCCTTGTTCGCTCTTCTCAAGCACCTTCATTGGTGCAGCTTAAAGATGTTTTTTTAGCCACTACTGTTGATTTACAGCGGACAGCTCCCAAACCGGTGCTTACGGTTTATGGAGTGAATTCTAGGTCTGTGTCACCTCTCTCAAAGAGAAGTCTTCCTCGATCGGCTACTCCTGTTCCTACAGCATCTGGACTTTCTTTCTCCCAAAGTATTTCTGATATCTTGAAGAGAACAAATGAGCTTTTGAATCAAGAAGTGTCAAGTTTACGTGCACAGGTTGAAAGCTTGAGACAAAGATATGAACTCCAGGAACTAGAGCTTCAAAGATCAATGAAGAAGACACAAGAAGCACTGACCTTAGCTGCAGATGAATCTGCTAAATCTAAAGCTGCGAAAGAAGTCATTAAATCGCTAACCTCTCAGCTCAAGGATATGGCTGAGAGGTTACCTGCTGGAGTTAATGAAACTGAGAATGCAATACCAGCATATCCTCCCAATGGTTCAGAGCCATGTGGCATTGACTATTTGGACACAAATGGAAAGCACTATTCTAGATCGAATTCCATTAGCAGCTTCTTGTTGGCTTCTCCCTCGGCCATAGACTATGCCGCATGGGGTGGAAGTCAATGCATGACTAATTCACCCCGGGAACTACCTGAACCCAGTGAAATCAATCTTGAACAAGAGCTAAAGTTGCTGCTGCCCAACAGGATTGAGGGTCATAAAGATTTTAGATTGCAAGACGGTGGAAAAGTTCGAGCAAGTTTACCAGAGAAACTTGAAGGACAATCTGAACCCTCCCGTTACAATGAGAGTAGTGATACTACATTGGCTACTAATGGTAATCAAGTCGAGGCAGAATGGATTGAACAATTTGAACCTGGTGTATATATCACTTTGGTTGCTTTGCAAGATGGAGTTAGAGATCTTAAACGAGTTCGCTTCAGCCGAAGACGATTTGAAGAGCGACAAGCAGAGAATTGGTGGGCCGAAAACAGGGAGAAGGTGTACAAGAAATACAATGTTAGTGGAGCCGACCAGTCTTCAATTTCGAGTCAAGCAGATCGGAGATCAGAGGGAGCTATCTCACCTTCTTCACGACAACCTTAG 3330 42.94 FLLQALVALKKGAQLLTYGRNGKPKFCSFRLSNDELSLIWISSSGERSLQLASISRIIPGQRTPVVERYLHPEKDYLSFSLIYNGGKNSLDLICKDKVEAEVWIAGLKALIASGQGGRSKIDGWNDGGFYLDDGSDLTSNSESDSSNCATRDLSSSEVSADLNHNISPKRFRPENSGQSERLNVPSSHPNMQVRGYGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEFISDNVVKVGAEKNTNYVTLRADVLLPKLLESNVVLDIHHIACGVRHSALVTRQGEVFTWGEESGGRLGHGVRKNVIRPCIVESLAAINVDFVACGEFHTCAVTMAGELYTWGDGTHYAGLLGHGSDVSHWIPKRVSGALEGLQIASVTCGPWHTALITSMGQLFTFGDGTFGVLGHGDREKVSYPREVESLSGLRTIAVACGVWHTAAIVEVIMTQSSSSVCSGKLFTWGDGDKNRLGHGDKDPRLKPTCVPALIDYNFHKIACGHSITVGLTKSGQVFTMGSPVYGQLGNPLADGKLPCLVEDRLVGESIEEVACGAYHVAVLSHRNEVYTWGKGANGRLGHGDVEDRKMPTLVEGLKERHVKYISCGSNYMAAICLHKWVPGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPSSGKGYRVCDSCYTKLNKVSEASNNDRRNAIPRLSGVNKDRLEKREFHVSDSMPSNMDLIKQLDSKAAKQGRKAADTFSLVRSSQAPSLVQLKDVFLATTVDLQRTAPKPVLTVYGVNSRSVSPLSKRSLPRSATPVPTASGLSFSQSISDILKRTNELLNQEVSSLRAQVESLRQRYELQELELQRSMKKTQEALTLAADESAKSKAAKEVIKSLTSQLKDMAERLPAGVNETENAIPAYPPNGSEPCGIDYLDTNGKHYSRSNSISSFLLASPSAIDYAAWGGSQCMTNSPRELPEPSEINLEQELKLLLPNRIEGHKDFRLQDGGKVRASLPEKLEGQSEPSRYNESSDTTLATNGNQVEAEWIEQFEPGVYITLVALQDGVRDLKRVRFSRRRFEERQAENWWAENREKVYKKYNVSGADQSSISSQADRRSEGAISPSSRQP 1109
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18929340 18935291 + Bpe009451.1 Bpe02g01605 99754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01605 1109 MobiDBLite consensus disorder prediction 1081 1109 - -
Bpe02g01605 1109 Pfam FYVE zinc finger 613 679 IPR000306 GO:0046872
Bpe02g01605 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 456 503 IPR000408 -
Bpe02g01605 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 287 335 IPR000408 -
Bpe02g01605 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 339 390 IPR000408 -
Bpe02g01605 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 394 442 IPR000408 -
Bpe02g01605 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 508 557 IPR000408 -
Bpe02g01605 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 562 609 IPR000408 -
Bpe02g01605 1109 Pfam Pleckstrin homology domain 29 111 IPR001849 -
Bpe02g01605 1109 Pfam Transcription factor BRX N-terminal domain 863 898 IPR027988 -
Bpe02g01605 1109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 686 IPR013083 -
Bpe02g01605 1109 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 8 1088 - -
Bpe02g01605 1109 Coils Coil 812 857 - -
Bpe02g01605 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 432 442 IPR000408 -
Bpe02g01605 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 287 338 IPR000408 -
Bpe02g01605 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 457 508 IPR000408 -
Bpe02g01605 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 380 390 IPR000408 -
Bpe02g01605 1109 SUPERFAMILY FYVE/PHD zinc finger 613 685 IPR011011 -
Bpe02g01605 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 561 612 IPR000408 -
Bpe02g01605 1109 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 617 679 IPR017455 -
Bpe02g01605 1109 MobiDBLite consensus disorder prediction 1082 1109 - -
Bpe02g01605 1109 PRINTS Chromosome condensation regulator RCC1 signature 396 410 IPR000408 -
Bpe02g01605 1109 PRINTS Chromosome condensation regulator RCC1 signature 339 355 IPR000408 -
Bpe02g01605 1109 PRINTS Chromosome condensation regulator RCC1 signature 498 516 IPR000408 -
Bpe02g01605 1109 PRINTS Chromosome condensation regulator RCC1 signature 556 577 IPR000408 -
Bpe02g01605 1109 PRINTS Chromosome condensation regulator RCC1 signature 289 305 IPR000408 -
Bpe02g01605 1109 PRINTS Chromosome condensation regulator RCC1 signature 380 396 IPR000408 -
Bpe02g01605 1109 CDD PH_PLC_plant-like 2 112 - -
Bpe02g01605 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 509 560 IPR000408 -
Bpe02g01605 1109 SUPERFAMILY RCC1/BLIP-II 224 614 IPR009091 -
Bpe02g01605 1109 Gene3D - 203 453 IPR009091 -
Bpe02g01605 1109 MobiDBLite consensus disorder prediction 985 1016 - -
Bpe02g01605 1109 ProSiteProfiles BRX domain profile. 1026 1081 IPR013591 -
Bpe02g01605 1109 MobiDBLite consensus disorder prediction 138 190 - -
Bpe02g01605 1109 Pfam Transcription factor regulating root and shoot growth via Pin3 1025 1080 IPR013591 -
Bpe02g01605 1109 Gene3D - 3 117 IPR011993 -
Bpe02g01605 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 225 286 IPR000408 -
Bpe02g01605 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 339 393 IPR000408 -
Bpe02g01605 1109 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 8 1088 - -
Bpe02g01605 1109 Coils Coil 868 888 - -
Bpe02g01605 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 273 283 IPR000408 -
Bpe02g01605 1109 SUPERFAMILY PH domain-like 3 111 - -
Bpe02g01605 1109 Gene3D - 454 610 IPR009091 -
Bpe02g01605 1109 SMART fyve_4 612 680 IPR000306 GO:0046872
Bpe02g01605 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 394 445 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01605 - - - tcc:18592573 1622.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01605 Bpe04g00023 CCT
Bpe02g00609 Bpe02g01605 CCT
Bpe02g01605 Bpe14g00336 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00609 Bpe-Chr2:3963709 Bpe02g01605 Bpe-Chr2:18929340 0 dispersed
Bpe02g01605 Bpe-Chr2:18929340 Bpe04g00023 Bpe-Chr4:222995 1.64E-10 dispersed
Bpe11g00389 Bpe-Chr11:2965213 Bpe02g01605 Bpe-Chr2:18929340 0 transposed
Bpe13g01417 Bpe-Chr13:19418907 Bpe02g01605 Bpe-Chr2:18929340 4.59E-08 transposed
Bpe14g00336 Bpe-Chr14:3247589 Bpe02g01605 Bpe-Chr2:18929340 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01605 Bpe_Chr02 FPKM 16.881235 18.412788 24.751608 25.443214 33.106812 34.620152 34.321182 21.369045 21.079641 21.918243