Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01612 ATGCATGGGCAGGTTCAAAGACGTTTGATCCAAAACCGTGTAGCTGCTCGTAAAAGTCGTCAAAGGAAAAAGGCATACGTCCAACATTTAGAAACTAGCCGTTTGAAGCTAGCACAGTTGGAGCAAGAACTGGTGAGAGTCCAACAGCAGGGTCTATACACAGGCAATGTAATGGACTCAGGATTATGTGGAACAGTAAACCCAGTGATTGCTGAATTTGAAATGGAATATACAATTTGGGTTGGAGAGCAACAGAGACAGGACAGTGGGCTTCGTGATGCATTGCAAGCTCAAGCAACTGATCTACAGCTTCACACACTTGTAGACAGTGCCTTGAATCACTACAACAATCTTTTTCGCATGAAATCAGATGCTGCAAAAGGTGATGTTTTCTACTTGTTGTCTGGCTTGTGGAGAACAACAGCTGAACGCTTTTTCCTATGGCTTGGAGGATTCCGCCCATCTCAGCTTCTAAATGTTCTCATGCCACATTTTGGACCCTTAACTGATGAACAAGTATTGCATATTAGTAATTTGCGACAATCATCTCAAGAAGCTGAGTATGCTCTCTCACAGGGAATGGATCAACTACATCAAGCTATATTGCAAAGCGTCTCAACAGATCTCCTAAGTTCAGGAAGTTTTTCTTTCCAGATGGATGATCCAATGGAGAAGTTTGAAACACTGGAGAATTTCGTGAGCCAGCTTATTGCACTCTGTACACAGGCAGACCATCTTCGGCAACAGACCCTCCAGCGGGTGTCTCGCATCCTAATGACAGAGCAAGCAGCTCGAGGCCTGCTTGCCTTAGGAGAGTACTTTCACCGCCTCCGTGCTCTTAGTTCTGTTTGGACTGCCCGTCCTCATGAACCCACTATGTAG 882 45.12 MHGQVQRRLIQNRVAARKSRQRKKAYVQHLETSRLKLAQLEQELVRVQQQGLYTGNVMDSGLCGTVNPVIAEFEMEYTIWVGEQQRQDSGLRDALQAQATDLQLHTLVDSALNHYNNLFRMKSDAAKGDVFYLLSGLWRTTAERFFLWLGGFRPSQLLNVLMPHFGPLTDEQVLHISNLRQSSQEAEYALSQGMDQLHQAILQSVSTDLLSSGSFSFQMDDPMEKFETLENFVSQLIALCTQADHLRQQTLQRVSRILMTEQAARGLLALGEYFHRLRALSSVWTARPHEPTM 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18997876 18999969 - Bpe009459.1 Bpe02g01612 99761

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01612 293 Pfam Seed dormancy control 90 162 IPR025422 GO:0006351|GO:0043565
Bpe02g01612 293 PANTHER TRANSCRIPTION FACTOR TGA7 3 291 - -
Bpe02g01612 293 PANTHER TRANSCRIPTION FACTOR TGA9 3 291 - -
Bpe02g01612 293 Gene3D - 4 53 - -
Bpe02g01612 293 SMART brlzneu 4 63 IPR004827 GO:0003700|GO:0006355
Bpe02g01612 293 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 7 22 IPR004827 GO:0003700|GO:0006355
Bpe02g01612 293 ProSiteProfiles DOG1 domain profile. 70 287 IPR025422 GO:0006351|GO:0043565
Bpe02g01612 293 Pfam bZIP transcription factor 4 37 IPR004827 GO:0003700|GO:0006355
Bpe02g01612 293 SUPERFAMILY Leucine zipper domain 5 45 IPR046347 GO:0003700|GO:0006355
Bpe02g01612 293 Coils Coil 23 50 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01612 K14431 TGA; transcription factor TGA - vvi:100255706 372.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01612 Bpe-Chr2:18997876 Bpe15g00444 Bpe-Chr15:15907624 1.22E-99 dispersed
Bpe11g00260 Bpe-Chr11:1888291 Bpe02g01612 Bpe-Chr2:18997876 8.25E-06 dispersed
Bpe14g00350 Bpe-Chr14:3354103 Bpe02g01612 Bpe-Chr2:18997876 5.90E-131 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00296 . 24 329 bZIP Transcription Factor Family AT2G35530 58.8 8.8e-80 294.3
Bpe15g01208 . 10 244 bZIP Transcription Factor Family AT2G40620 61.6 1.4e-63 240.4
Bpe13g00723 . 85 322 bZIP Transcription Factor Family AT2G40620 50.2 1.8e-44 176.8
Bpe15g00837 CCT,ECH 383 534 bZIP Transcription Factor Family AT2G40620 63.8 1.0e-39 161.0
Bpe12g00099 CCT,ECH 385 532 bZIP Transcription Factor Family AT2G40620 61.8 1.7e-37 153.7
Bpe12g00121 CCT 1 264 bZIP Transcription Factor Family AT4G35040 56.2 2.5e-64 242.3
Bpe15g00814 CCT 1 262 bZIP Transcription Factor Family AT4G35040 58.0 2.5e-64 242.3
Bpe15g00992 . 1 332 bZIP Transcription Factor Family AT5G06950 78.3 2.3e-134 475.3
Bpe03g01087 BCT 21 357 bZIP Transcription Factor Family AT5G06950 73.3 4.5e-127 451.1
Bpe04g01381 BCT 116 447 bZIP Transcription Factor Family AT5G06950 74.4 1.7e-126 449.1
Bpe10g00943 CCT 1 336 bZIP Transcription Factor Family AT5G06950 65.8 9.5e-109 390.2
Bpe04g00560 . 198 489 bZIP Transcription Factor Family AT5G06950 59.2 6.9e-91 330.9
Bpe11g00859 . 165 439 bZIP Transcription Factor Family AT5G06950 55.9 4.9e-81 298.1
Bpe15g00444 . 78 357 bZIP Transcription Factor Family AT5G06950 53.3 2.7e-71 265.8
Bpe02g01612 . 7 290 bZIP Transcription Factor Family AT5G06950 52.1 6.2e-68 254.6
Bpe02g02277 CCT 3 200 bZIP Transcription Factor Family AT5G06950 66.7 2.3e-62 236.1
Bpe14g00350 . 2 217 bZIP Transcription Factor Family AT5G06950 50.5 8.2e-52 201.1
Bpe11g00859 . 151 441 bZIP Transcription Factor Family AT1G08320 65.4 6.9e-105 377.5
Bpe03g01087 BCT 65 357 bZIP Transcription Factor Family AT1G08320 63.8 8.2e-98 354.0
Bpe04g01381 BCT 160 447 bZIP Transcription Factor Family AT1G08320 63.2 5.9e-96 347.8
Bpe04g00560 . 198 489 bZIP Transcription Factor Family AT1G08320 62.0 1.7e-95 346.3
Bpe15g00992 . 45 332 bZIP Transcription Factor Family AT1G08320 61.1 8.5e-95 344.0
Bpe10g00943 CCT 44 336 bZIP Transcription Factor Family AT1G08320 58.0 1.2e-88 323.6
Bpe15g00444 . 78 357 bZIP Transcription Factor Family AT1G08320 51.6 2.2e-74 276.2
Bpe15g00814 CCT 1 263 bZIP Transcription Factor Family AT2G16770 57.9 3.5e-63 238.4
Bpe12g00121 CCT 1 262 bZIP Transcription Factor Family AT2G16770 57.7 3.9e-62 235.0
Bpe15g00992 . 31 332 bZIP Transcription Factor Family AT5G06960 79.1 5.8e-124 440.7
Bpe04g01381 BCT 135 447 bZIP Transcription Factor Family AT5G06960 73.8 8.1e-118 420.2
Bpe03g01087 BCT 40 357 bZIP Transcription Factor Family AT5G06960 72.3 1.5e-116 416.0
Bpe10g00943 CCT 21 336 bZIP Transcription Factor Family AT5G06960 64.6 2.2e-99 359.0
Bpe04g00560 . 179 489 bZIP Transcription Factor Family AT5G06960 55.9 4.0e-85 311.6
Bpe11g00859 . 148 439 bZIP Transcription Factor Family AT5G06960 52.9 7.4e-79 290.8
Bpe15g00444 . 78 357 bZIP Transcription Factor Family AT5G06960 51.9 2.0e-68 256.1
Bpe02g01612 . 7 290 bZIP Transcription Factor Family AT5G06960 51.0 8.8e-64 240.7
Bpe02g02277 CCT 2 200 bZIP Transcription Factor Family AT5G06960 62.8 6.1e-57 218.0
Bpe15g00837 CCT,ECH 1 533 bZIP Transcription Factor Family AT4G38900 57.6 3.2e-133 472.2
Bpe12g00099 CCT,ECH 1 516 bZIP Transcription Factor Family AT4G38900 59.3 2.8e-129 459.1
Bpe15g00837 CCT,ECH 72 530 bZIP Transcription Factor Family AT2G21230 53.9 6.7e-101 364.8
Bpe12g00099 CCT,ECH 9 515 bZIP Transcription Factor Family AT2G21230 53.3 2.0e-100 363.2
Bpe12g00198 . 1 237 bZIP Transcription Factor Family AT2G42380 56.8 1.6e-61 233.0
Bpe15g00728 . 1 236 bZIP Transcription Factor Family AT2G42380 57.9 4.3e-59 224.9
Bpe11g00454 . 1 223 bZIP Transcription Factor Family AT2G42380 51.2 2.8e-50 195.7
Bpe04g00355 BCT 101 296 bZIP Transcription Factor Family AT1G03970 58.1 5.1e-44 174.9
Bpe02g00211 BCT 105 296 bZIP Transcription Factor Family AT1G03970 53.7 1.3e-39 160.2
Bpe06g00053 BCT 1 329 bZIP Transcription Factor Family AT4G36730 51.2 1.7e-62 236.5
Bpe10g00107 BCT 47 366 bZIP Transcription Factor Family AT4G36730 52.6 1.2e-60 230.3
Bpe15g00992 . 1 332 bZIP Transcription Factor Family AT3G12250 78.3 7.7e-135 476.9
Bpe04g01381 BCT 116 447 bZIP Transcription Factor Family AT3G12250 74.8 5.6e-125 444.1
Bpe03g01087 BCT 21 357 bZIP Transcription Factor Family AT3G12250 72.5 4.0e-123 438.0
Bpe10g00943 CCT 1 336 bZIP Transcription Factor Family AT3G12250 65.7 4.7e-108 387.9
Bpe04g00560 . 180 489 bZIP Transcription Factor Family AT3G12250 56.1 2.2e-89 325.9
Bpe11g00859 . 165 439 bZIP Transcription Factor Family AT3G12250 56.9 1.7e-81 299.7
Bpe02g01612 . 7 290 bZIP Transcription Factor Family AT3G12250 51.7 2.0e-66 249.6
Bpe02g02277 CCT 3 200 bZIP Transcription Factor Family AT3G12250 65.7 1.5e-61 233.4
Bpe10g00943 CCT 1 336 bZIP Transcription Factor Family AT1G68640 70.3 2.6e-125 445.7
Bpe04g01381 BCT 39 447 bZIP Transcription Factor Family AT1G68640 57.8 4.5e-117 418.3
Bpe03g01087 BCT 19 357 bZIP Transcription Factor Family AT1G68640 67.2 6.5e-116 414.5
Bpe15g00992 . 1 332 bZIP Transcription Factor Family AT1G68640 65.4 1.4e-110 396.7
Bpe04g00560 . 186 489 bZIP Transcription Factor Family AT1G68640 55.2 5.0e-84 308.5
Bpe11g00859 . 163 438 bZIP Transcription Factor Family AT1G68640 55.3 8.2e-79 291.2
Bpe02g02277 CCT 1 200 bZIP Transcription Factor Family AT1G68640 69.0 2.9e-68 256.1
Bpe02g01612 . 7 290 bZIP Transcription Factor Family AT1G68640 51.0 1.8e-65 246.9
Bpe06g00588 . 1 140 bZIP Transcription Factor Family AT3G62420 60.4 4.3e-37 151.0
Bpe13g00969 . 10 418 bZIP Transcription Factor Family AT2G46270 51.2 6.5e-79 291.2
Bpe02g01240 CCT 1 146 bZIP Transcription Factor Family AT5G11260 70.7 4.2e-42 167.9
Bpe14g00575 CCT 1 147 bZIP Transcription Factor Family AT5G11260 70.1 5.7e-39 157.5
Bpe13g00723 . 1 368 bZIP Transcription Factor Family AT2G31370 63.3 7.0e-106 380.9
Bpe14g01060 . 53 370 bZIP Transcription Factor Family AT2G31370 69.5 1.9e-103 372.9
Bpe12g00198 . 1 237 bZIP Transcription Factor Family AT3G58120 51.3 4.3e-57 218.4
Bpe15g00728 . 1 236 bZIP Transcription Factor Family AT3G58120 50.2 3.8e-53 205.3
Bpe04g01632 . 17 295 bZIP Transcription Factor Family AT3G56850 54.7 1.3e-64 243.4
Bpe11g00296 . 1 331 bZIP Transcription Factor Family AT1G32150 58.1 2.3e-77 286.2
Bpe13g00723 . 1 363 bZIP Transcription Factor Family AT1G06070 67.9 7.6e-119 424.1
Bpe14g01060 . 1 364 bZIP Transcription Factor Family AT1G06070 65.8 2.3e-115 412.5
Bpe12g00099 CCT,ECH 385 517 bZIP Transcription Factor Family AT1G06070 67.4 5.1e-38 155.6
Bpe15g00837 CCT,ECH 383 515 bZIP Transcription Factor Family AT1G06070 66.7 2.5e-37 153.3
Bpe11g00296 . 24 329 bZIP Transcription Factor Family AT2G35530 58.8 8.8e-80 294.3
Bpe15g01208 . 10 244 bZIP Transcription Factor Family AT2G40620 61.6 1.4e-63 240.4
Bpe13g00723 . 85 322 bZIP Transcription Factor Family AT2G40620 50.2 1.8e-44 176.8
Bpe15g00837 CCT,ECH 383 534 bZIP Transcription Factor Family AT2G40620 63.8 1.0e-39 161.0
Bpe12g00099 CCT,ECH 385 532 bZIP Transcription Factor Family AT2G40620 61.8 1.7e-37 153.7
Bpe12g00121 CCT 1 264 bZIP Transcription Factor Family AT4G35040 56.2 2.5e-64 242.3
Bpe15g00814 CCT 1 262 bZIP Transcription Factor Family AT4G35040 58.0 2.5e-64 242.3
Bpe15g00992 . 1 332 bZIP Transcription Factor Family AT5G06950 78.3 2.3e-134 475.3
Bpe03g01087 BCT 21 357 bZIP Transcription Factor Family AT5G06950 73.3 4.5e-127 451.1
Bpe04g01381 BCT 116 447 bZIP Transcription Factor Family AT5G06950 74.4 1.7e-126 449.1
Bpe10g00943 CCT 1 336 bZIP Transcription Factor Family AT5G06950 65.8 9.5e-109 390.2
Bpe04g00560 . 198 489 bZIP Transcription Factor Family AT5G06950 59.2 6.9e-91 330.9
Bpe11g00859 . 165 439 bZIP Transcription Factor Family AT5G06950 55.9 4.9e-81 298.1
Bpe15g00444 . 78 357 bZIP Transcription Factor Family AT5G06950 53.3 2.7e-71 265.8
Bpe02g01612 . 7 290 bZIP Transcription Factor Family AT5G06950 52.1 6.2e-68 254.6
Bpe02g02277 CCT 3 200 bZIP Transcription Factor Family AT5G06950 66.7 2.3e-62 236.1
Bpe14g00350 . 2 217 bZIP Transcription Factor Family AT5G06950 50.5 8.2e-52 201.1
Bpe11g00859 . 151 441 bZIP Transcription Factor Family AT1G08320 65.4 6.9e-105 377.5
Bpe03g01087 BCT 65 357 bZIP Transcription Factor Family AT1G08320 63.8 8.2e-98 354.0
Bpe04g01381 BCT 160 447 bZIP Transcription Factor Family AT1G08320 63.2 5.9e-96 347.8
Bpe04g00560 . 198 489 bZIP Transcription Factor Family AT1G08320 62.0 1.7e-95 346.3
Bpe15g00992 . 45 332 bZIP Transcription Factor Family AT1G08320 61.1 8.5e-95 344.0
Bpe10g00943 CCT 44 336 bZIP Transcription Factor Family AT1G08320 58.0 1.2e-88 323.6
Bpe15g00444 . 78 357 bZIP Transcription Factor Family AT1G08320 51.6 2.2e-74 276.2
Bpe15g00814 CCT 1 263 bZIP Transcription Factor Family AT2G16770 57.9 3.5e-63 238.4
Bpe12g00121 CCT 1 262 bZIP Transcription Factor Family AT2G16770 57.7 3.9e-62 235.0
Bpe15g00992 . 31 332 bZIP Transcription Factor Family AT5G06960 79.1 5.8e-124 440.7
Bpe04g01381 BCT 135 447 bZIP Transcription Factor Family AT5G06960 73.8 8.1e-118 420.2
Bpe03g01087 BCT 40 357 bZIP Transcription Factor Family AT5G06960 72.3 1.5e-116 416.0
Bpe10g00943 CCT 21 336 bZIP Transcription Factor Family AT5G06960 64.6 2.2e-99 359.0
Bpe04g00560 . 179 489 bZIP Transcription Factor Family AT5G06960 55.9 4.0e-85 311.6
Bpe11g00859 . 148 439 bZIP Transcription Factor Family AT5G06960 52.9 7.4e-79 290.8
Bpe15g00444 . 78 357 bZIP Transcription Factor Family AT5G06960 51.9 2.0e-68 256.1
Bpe02g01612 . 7 290 bZIP Transcription Factor Family AT5G06960 51.0 8.8e-64 240.7
Bpe02g02277 CCT 2 200 bZIP Transcription Factor Family AT5G06960 62.8 6.1e-57 218.0
Bpe15g00837 CCT,ECH 1 533 bZIP Transcription Factor Family AT4G38900 57.6 3.2e-133 472.2
Bpe12g00099 CCT,ECH 1 516 bZIP Transcription Factor Family AT4G38900 59.3 2.8e-129 459.1
Bpe15g00837 CCT,ECH 72 530 bZIP Transcription Factor Family AT2G21230 53.9 6.7e-101 364.8
Bpe12g00099 CCT,ECH 9 515 bZIP Transcription Factor Family AT2G21230 53.3 2.0e-100 363.2
Bpe12g00198 . 1 237 bZIP Transcription Factor Family AT2G42380 56.8 1.6e-61 233.0
Bpe15g00728 . 1 236 bZIP Transcription Factor Family AT2G42380 57.9 4.3e-59 224.9
Bpe11g00454 . 1 223 bZIP Transcription Factor Family AT2G42380 51.2 2.8e-50 195.7
Bpe04g00355 BCT 101 296 bZIP Transcription Factor Family AT1G03970 58.1 5.1e-44 174.9
Bpe02g00211 BCT 105 296 bZIP Transcription Factor Family AT1G03970 53.7 1.3e-39 160.2
Bpe06g00053 BCT 1 329 bZIP Transcription Factor Family AT4G36730 51.2 1.7e-62 236.5
Bpe10g00107 BCT 47 366 bZIP Transcription Factor Family AT4G36730 52.6 1.2e-60 230.3
Bpe15g00992 . 1 332 bZIP Transcription Factor Family AT3G12250 78.3 7.7e-135 476.9
Bpe04g01381 BCT 116 447 bZIP Transcription Factor Family AT3G12250 74.8 5.6e-125 444.1
Bpe03g01087 BCT 21 357 bZIP Transcription Factor Family AT3G12250 72.5 4.0e-123 438.0
Bpe10g00943 CCT 1 336 bZIP Transcription Factor Family AT3G12250 65.7 4.7e-108 387.9
Bpe04g00560 . 180 489 bZIP Transcription Factor Family AT3G12250 56.1 2.2e-89 325.9
Bpe11g00859 . 165 439 bZIP Transcription Factor Family AT3G12250 56.9 1.7e-81 299.7
Bpe02g01612 . 7 290 bZIP Transcription Factor Family AT3G12250 51.7 2.0e-66 249.6
Bpe02g02277 CCT 3 200 bZIP Transcription Factor Family AT3G12250 65.7 1.5e-61 233.4
Bpe10g00943 CCT 1 336 bZIP Transcription Factor Family AT1G68640 70.3 2.6e-125 445.7
Bpe04g01381 BCT 39 447 bZIP Transcription Factor Family AT1G68640 57.8 4.5e-117 418.3
Bpe03g01087 BCT 19 357 bZIP Transcription Factor Family AT1G68640 67.2 6.5e-116 414.5
Bpe15g00992 . 1 332 bZIP Transcription Factor Family AT1G68640 65.4 1.4e-110 396.7
Bpe04g00560 . 186 489 bZIP Transcription Factor Family AT1G68640 55.2 5.0e-84 308.5
Bpe11g00859 . 163 438 bZIP Transcription Factor Family AT1G68640 55.3 8.2e-79 291.2
Bpe02g02277 CCT 1 200 bZIP Transcription Factor Family AT1G68640 69.0 2.9e-68 256.1
Bpe02g01612 . 7 290 bZIP Transcription Factor Family AT1G68640 51.0 1.8e-65 246.9
Bpe06g00588 . 1 140 bZIP Transcription Factor Family AT3G62420 60.4 4.3e-37 151.0
Bpe13g00969 . 10 418 bZIP Transcription Factor Family AT2G46270 51.2 6.5e-79 291.2
Bpe02g01240 CCT 1 146 bZIP Transcription Factor Family AT5G11260 70.7 4.2e-42 167.9
Bpe14g00575 CCT 1 147 bZIP Transcription Factor Family AT5G11260 70.1 5.7e-39 157.5
Bpe13g00723 . 1 368 bZIP Transcription Factor Family AT2G31370 63.3 7.0e-106 380.9
Bpe14g01060 . 53 370 bZIP Transcription Factor Family AT2G31370 69.5 1.9e-103 372.9
Bpe12g00198 . 1 237 bZIP Transcription Factor Family AT3G58120 51.3 4.3e-57 218.4
Bpe15g00728 . 1 236 bZIP Transcription Factor Family AT3G58120 50.2 3.8e-53 205.3
Bpe04g01632 . 17 295 bZIP Transcription Factor Family AT3G56850 54.7 1.3e-64 243.4
Bpe11g00296 . 1 331 bZIP Transcription Factor Family AT1G32150 58.1 2.3e-77 286.2
Bpe13g00723 . 1 363 bZIP Transcription Factor Family AT1G06070 67.9 7.6e-119 424.1
Bpe14g01060 . 1 364 bZIP Transcription Factor Family AT1G06070 65.8 2.3e-115 412.5
Bpe12g00099 CCT,ECH 385 517 bZIP Transcription Factor Family AT1G06070 67.4 5.1e-38 155.6
Bpe15g00837 CCT,ECH 383 515 bZIP Transcription Factor Family AT1G06070 66.7 2.5e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002529 2 5 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 0 1 13 7 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20988 PF14144 DOG1 5.40E-28 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01612 Bpe_Chr02 FPKM 42.620781 42.16774 6.497471 6.345267 5.566012 4.983006 4.65961 3.794184 4.189792 3.804967