Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01619 CTTTTCACTTCAAGCAATCAGACCGAAGGGATGGATTTGAAGAGTAGGAGGGGCAGGCCGAGGTTGGATCGCCGTAATGCGGCCAAGCACATTGAGTACGATGCACTGGCTTCATCTTCTTTGCCTGACGATTCTTCTGGATCGCTGCATACCCGCTCGCTTGAACTTCCGGATAAAACGAGCTTCCGAATAGGGGGAAGTGATGGGGAATTTGATCGTATATGTCGGAGTTTGGGGCTTTCAGGGCCGGACGACTTTACTATTCCTGCGTCGGCGTATCAATCTACGAATATCCGTTCCTCGTCTGATCGTCTACCCCACTCCAGGCTGCATAGGTTGGATAGAACTTGGGTGGAGGATGTGAAGGAGGAAGAAGACAGTGAAGCGGAAGCTGAGCTACGTGAGAGAGCAAGGGAATCGGTTAAAATTAGGGATTCGACTAAGTTACCTCGTTATGAAACAGCCGAGCTGAGTGGGAACGGGATCGTCAGTGGTAGTAGTGGAGGTGGAGGAGGCGCTGGTGGTGGAATTAAGGGTGTTCGTCCACCATTGGTTAAGCCCCCGCCTTTTATGCGCCCTCCGGTTCATGATAATGCTTCCTCAACTTGGGACATTTTCAGGGATTTTGCTCCTAATGATGAAGTAAGACCTTCAGTGGTGGTTCAAGAAGGAAACGATTCTCCTTCCGAAGATAATCACGAAGATGGAGTTGAATCCGAAGTGGGGGTCGTGGAACGAGAAGAGGGTGGAGGCACAGGCAGACTTGACGATAGTCTTCGTGAACAGTCAAATTCACCTTCATTTTCAACTTCAAATGATGATGATTCTTCAAGCACAACCACAGAGCCTTATATATCTCCAAATGGGAGACTGAAGCGGACTATTTCGAATTGGCAAAAGGGTGAACTTCTGGGGCGAGGATCATTTGGATCGGTGTACGAAGGAATTTCTGGTGATGGGTTTTTTTTCGCTGTCAAGGAAGTTTCACTGCTTGATCAAAACAATCAGGGACAACAAAGTATTATACAGCTTCAGCAGACGTATTTATTTTCTTCTGTTATTTACTCATACTCTGCTATTTATAAGTCCCAACTCTCAACAAGATCCATGAAAGAGATTGCTCTTTTAAGTCACTTTGAGCACGAGAATATAGTGCAATATTACGGCACCGAGAAGACTGAATCACACCTATTCATTTTTCTTGAGCTTGTGACAAAAGGATCCCTTATGAAGCTCTATCAGACGTATCATCTTATAGATTCTCAAGTTTCTGTATATACCAGACAAATTTTGCATGGTTTGAAATATCTTCATGATCAAAACGTGGTTCACAGGGATATTAAATGTGCGAATATATTAGTGAAATCCAGTGGAGCAGTAAAGCTTGCGGATTTTGGGTTGGCAAAGGCAACAAAAATGAATGATATTAAATCCTGCAAGGGAACAGCATTCTGGATGGCACCTGAGGTCGTTAATAGGAAGAACCAAGGATATGGTCACCCAGCTGATATTTGGGGCCTTGGTTGCACTGTATTGGAGATGTTAACAGGCAAAATTCCATACTCTGAGTTGGACAATCCAATGTCGGCATTGTTTAAAATCGGAAGTGGTAAGCTACCAGTTGTTCCGGATTGTCTATCAACAGATGCACGTGATTTTGTACTGCAGTGCTTACAGCCTAACCCACATGACCGTCCATCTGCTGCTCAACTCTTAGAGCATCCATTTGTGAAGAGATCTCTTCCTACTTCCTCAGGGCCTCAGTCGCCTACTCATCTAGCAGAAGGAAATAAAACTTTCTCCATGATAAGACTGTGA 1818 44.83 LFTSSNQTEGMDLKSRRGRPRLDRRNAAKHIEYDALASSSLPDDSSGSLHTRSLELPDKTSFRIGGSDGEFDRICRSLGLSGPDDFTIPASAYQSTNIRSSSDRLPHSRLHRLDRTWVEDVKEEEDSEAEAELRERARESVKIRDSTKLPRYETAELSGNGIVSGSSGGGGGAGGGIKGVRPPLVKPPPFMRPPVHDNASSTWDIFRDFAPNDEVRPSVVVQEGNDSPSEDNHEDGVESEVGVVEREEGGGTGRLDDSLREQSNSPSFSTSNDDDSSSTTTEPYISPNGRLKRTISNWQKGELLGRGSFGSVYEGISGDGFFFAVKEVSLLDQNNQGQQSIIQLQQTYLFSSVIYSYSAIYKSQLSTRSMKEIALLSHFEHENIVQYYGTEKTESHLFIFLELVTKGSLMKLYQTYHLIDSQVSVYTRQILHGLKYLHDQNVVHRDIKCANILVKSSGAVKLADFGLAKATKMNDIKSCKGTAFWMAPEVVNRKNQGYGHPADIWGLGCTVLEMLTGKIPYSELDNPMSALFKIGSGKLPVVPDCLSTDARDFVLQCLQPNPHDRPSAAQLLEHPFVKRSLPTSSGPQSPTHLAEGNKTFSMIRL 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19064137 19070627 + Bpe009466.1 Bpe02g01619 99768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01619 605 ProSiteProfiles Protein kinase domain profile. 298 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g01619 605 MobiDBLite consensus disorder prediction 39 55 - -
Bpe02g01619 605 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Bpe02g01619 605 MobiDBLite consensus disorder prediction 581 596 - -
Bpe02g01619 605 MobiDBLite consensus disorder prediction 159 197 - -
Bpe02g01619 605 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 14 111 - -
Bpe02g01619 605 SMART serkin_6 298 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g01619 605 Pfam Protein kinase domain 299 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g01619 605 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 174 347 - -
Bpe02g01619 605 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 371 587 - -
Bpe02g01619 605 MobiDBLite consensus disorder prediction 227 255 - -
Bpe02g01619 605 MobiDBLite consensus disorder prediction 214 290 - -
Bpe02g01619 605 MobiDBLite consensus disorder prediction 1 61 - -
Bpe02g01619 605 MobiDBLite consensus disorder prediction 257 290 - -
Bpe02g01619 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Bpe02g01619 605 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 14 111 - -
Bpe02g01619 605 MobiDBLite consensus disorder prediction 12 31 - -
Bpe02g01619 605 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 174 347 - -
Bpe02g01619 605 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 371 587 - -
Bpe02g01619 605 MobiDBLite consensus disorder prediction 580 605 - -
Bpe02g01619 605 SUPERFAMILY Protein kinase-like (PK-like) 271 585 IPR011009 -
Bpe02g01619 605 Gene3D Transferase(Phosphotransferase) domain 1 295 599 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01619 K13414 MEKK1; mitogen-activated protein kinase kinase kinase 1 [EC:2.7.11.25] - pop:7463181 622.083
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00081 Bpe02g01619 CCT
Bpe02g01619 Bpe14g00364 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01619 Bpe-Chr2:19064137 Bpe03g00140 Bpe-Chr3:1911806 1.61E-77 dispersed
Bpe06g00511 Bpe-Chr6:16298357 Bpe02g01619 Bpe-Chr2:19064137 7.93E-19 transposed
Bpe12g00747 Bpe-Chr12:12984004 Bpe02g01619 Bpe-Chr2:19064137 2.21E-140 transposed
Bpe14g00364 Bpe-Chr14:3471716 Bpe02g01619 Bpe-Chr2:19064137 0 wgd
Bpe02g00081 Bpe-Chr2:608986 Bpe02g01619 Bpe-Chr2:19064137 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g328 . Blo12g00687 . . Bpe02g00081 . . Bma01g02638 Cmo04g02435 Cmo15g00733 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00197 Blo18g00199 Bda11g00746 Bda01g01408 Bpe02g01619 Bpe14g00364 Bma01g00841 Bma02g00241 . . . . . Car04g02247 Car15g00659 Cpe01g02021 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002867 2 1 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 5 1 5 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63193 PF00069 Pkinase 3.30E-62 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01619 Bpe_Chr02 FPKM 0.0 0.0 0.168726 0.0 0.0 0.0 0.0 0.376506 0.436051 0.278733