Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01625 ATGGCGGATTGCAGAAACCTGAAGAATAACCGCACCCAGAAAACGGAGAAACCGTGGGGTGTTATCAGGGGCCTTTTCAGCTGCGGACATCTCCAGAATTCTGCTCGGCAAGGACTGTTGTGTAAGGAGAAGGAAGAAGAAGAATGGGTCAAGAAATGTAAGAAAGTGAAATGCCTTTCTAGTTCGCTTTGTAATAACACGAAGGTAATGCAAAGGCCTGAAACTGGGTCGCCGGAGGTTTACAAAAAAACGGCTTTAATGGCTTCCTCAAACAGCTACATTACCGATTCTTCTAGCTCTACCAGGTCTATGAAGTCTACTGTTTACGAACAAAACGGCGTCATTTCAACGTCTTTTTCTTCGTCTTCTTCTTCTGCAACTTCCATCGCCGCCTTCGGTGGGTCTTTCAGAGGAATACCTTTCAGAAAAATTTCTGGGTGTTACGAGTGTAAAATGGGGATCAACCCTGTCCTTGGATATACCAAAGATTCTTCTTTGAGATCAAGCATTTTTCCTTGTCCTCAATGTTGTGAGATTTTCGTGAAACCTGAAATTCTGGAGCTTCATCTGGCCATCAACCATGCTGGTATGACCAAATTCTTTCTTCTTGAAGCTATTTTGCTCTTCCTAAAAATAAAAATTGATCGTTTAGAAATACTATTTTCCTTTGGTTGCTTAGTATCTGAATTAGACGAAGAGGATACAAGCAAAAACATAGTGGAAATCATATTCAAATCAAGCTGGATGAAGAAGGAACCTCAAATATGCAAGATAGAACGAGTTCTAAAAGTCCACAACACTGAAAAAACCATTTCGAAATTCGAAGAGTACAGAGAGGCCATTAAAGCCAAAGCAACCAAGCTCCAGAAGAAACACCCCCGATGCCTTGCAGACGGAAACGAGCTTCTCCGGTTCCACTGCACCACCTTAACTTGCACCCTAGGCGTCAATGGCTGCTCCACTCTATGCCACTCGATCCATCCTCAGTGCAGTATCTGCAGCATCATAAGGAGCGGCTTCAGGGCAGCCGAGAAGGGAATTTTGACGATGGCAGCAAGTGTAGCAGCTCATGACAGAGCCGGGGAGGTGGTGGAAAGCAATGAGAAGAGGGCGATGGTGGTTTGCAGGGTGGTGGCCGGGAGGGTGAAGAGGAGCGGGGAAGGGAGCATGGAGGAGTATGACTCAGTGAGTGGAGGTATGGGAGTTTATTCTAATTTGGACGAGTTGTATGTGTTTAATGCCAAGGCTATACTGCCTTGTTTTGTTGTAATCTATCAAGGGTAA 1284 44.86 MADCRNLKNNRTQKTEKPWGVIRGLFSCGHLQNSARQGLLCKEKEEEEWVKKCKKVKCLSSSLCNNTKVMQRPETGSPEVYKKTALMASSNSYITDSSSSTRSMKSTVYEQNGVISTSFSSSSSSATSIAAFGGSFRGIPFRKISGCYECKMGINPVLGYTKDSSLRSSIFPCPQCCEIFVKPEILELHLAINHAGMTKFFLLEAILLFLKIKIDRLEILFSFGCLVSELDEEDTSKNIVEIIFKSSWMKKEPQICKIERVLKVHNTEKTISKFEEYREAIKAKATKLQKKHPRCLADGNELLRFHCTTLTCTLGVNGCSTLCHSIHPQCSICSIIRSGFRAAEKGILTMAASVAAHDRAGEVVESNEKRAMVVCRVVAGRVKRSGEGSMEEYDSVSGGMGVYSNLDELYVFNAKAILPCFVVIYQG 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19116278 19117561 + Bpe009472.1 Bpe02g01625 99774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01625 427 SUPERFAMILY ADP-ribosylation 227 426 - -
Bpe02g01625 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 199 IPR013087 -
Bpe02g01625 427 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 21 426 - -
Bpe02g01625 427 ProSitePatterns Zinc finger C2H2 type domain signature. 173 194 IPR013087 -
Bpe02g01625 427 Gene3D - 226 426 - -
Bpe02g01625 427 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 21 426 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01625 - - - qlo:115960248 445.277
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01625 Bpe04g00477 CCT
Bpe02g00078 Bpe02g01625 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01625 Bpe-Chr2:19116278 Bpe04g00246 Bpe-Chr4:1648146 1.32E-86 dispersed
Bpe02g00078 Bpe-Chr2:591296 Bpe02g01625 Bpe-Chr2:19116278 1.36E-129 wgd
Bpe02g01625 Bpe-Chr2:19116278 Bpe04g00477 Bpe-Chr4:3012432 1.60E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g315 . Blo12g00683 . Bda03g00523 Bpe02g00078 Bpe04g00477 . Bma01g02640 Cmo04g02449 Cmo15g00715 . . . . . . . . . . . . . . . . . . . . . Cone4ag1379 Cone7ag1552 Cone17ag1266 . . . . . Blo17g00187 . . Bda01g01412 Bpe02g01625 . Bma01g00833 Bma02g00231 . . . . . Car04g02261 Car15g00647 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003484 2 1 3 5 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01625 Bpe_Chr02 FPKM 21.713835 23.638983 9.013548 8.556678 90.691498 93.573608 91.35955 0.637706 0.539328 0.500365