Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01628 ATGGCTTCCCACTTTCATTTCCTTCACCTAGTTTTGTTTCTATGCATTTTAATATCAGCAGGAATAAAACTCTCCCACTGTGCAAGAATATTTTCCATAGTCAACAACTGCAAAGAGACAATTTGGCCGGGAATCACTCCCGGAGAAAATTTTAACGGCGGTGGATTTCAACTGAAATCCGGCCAGTCTCTTGTCTTCACTGCCCCAGTCGGCTGGTCCGGTCGGATATGGGGTAGAACCGGTTGCAACTTCGACAAAAACGGCAACGGTACCTGCCAAACCGGCGCCTGCGGCTCTTCCCTCAAGTGCACCTCCTCCGGCGAAACTCCGGCATCCCTTGCCGAGTTTACTCTTGCAGCGGTGGATTTCTACGATGTCAGCCTCGTGGATGGCTTTAACTTGCCTATCGTCGTCACCCCCATTAACGGTAGTGGAAACTGCAGCATCGCCGGCTGCGACGGCGATCTAAGAACCAGTTGCCCAACTGAACTTTCAGTAAAATGGGACCGAAAAACCGTAGGTTGCCGGAGCGCCTGCGACGTGTTCAACACCGACCAGTATTGCTGCAGAGGGGTATACGGAAACCCAGTAATTTGTCAGCCAACGTACTATTCGAAGAAATTTAAGGAGATATGTCCGTCAGCGTATAGCTACGCTTACGACGATCCGACCGCCATCTTCACTTGCTCCGGCACGGATTACGTCATCGCGTTCTGCTCTTCCAGGAAACAACCAGTGTGCACTTATCACGACAACAAGCTTGTATGCAGTGGATCAGATGGACTAAACTCCTTGATAGGAATTAGATGGTGGATTATTATTATTCCTTTTTTATTTTTATTTTTTAAATTTCATCCATTTATTTTCTTAATTGTTTAG 879 47.33 MASHFHFLHLVLFLCILISAGIKLSHCARIFSIVNNCKETIWPGITPGENFNGGGFQLKSGQSLVFTAPVGWSGRIWGRTGCNFDKNGNGTCQTGACGSSLKCTSSGETPASLAEFTLAAVDFYDVSLVDGFNLPIVVTPINGSGNCSIAGCDGDLRTSCPTELSVKWDRKTVGCRSACDVFNTDQYCCRGVYGNPVICQPTYYSKKFKEICPSAYSYAYDDPTAIFTCSGTDYVIAFCSSRKQPVCTYHDNKLVCSGSDGLNSLIGIRWWIIIIPFLFLFFKFHPFIFLIV 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19125861 19126960 - Bpe009475.1 Bpe02g01628 99777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01628 292 CDD TLP-PA 30 239 - -
Bpe02g01628 292 Gene3D Thaumatin 30 239 IPR037176 -
Bpe02g01628 292 SUPERFAMILY Osmotin, thaumatin-like protein 30 240 IPR037176 -
Bpe02g01628 292 PIRSF PR5 1 276 IPR001938 -
Bpe02g01628 292 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Bpe02g01628 292 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Bpe02g01628 292 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Bpe02g01628 292 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Bpe02g01628 292 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Bpe02g01628 292 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Bpe02g01628 292 SMART tha2 31 240 IPR001938 -
Bpe02g01628 292 PANTHER OS03G0233200 PROTEIN 8 254 IPR001938 -
Bpe02g01628 292 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 8 254 - -
Bpe02g01628 292 ProSiteProfiles Thaumatin family profile. 28 239 IPR001938 -
Bpe02g01628 292 Pfam Thaumatin family 35 239 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01628 - - - pop:18096219 458.373
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01628 Bpe14g00373 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01628 Bpe-Chr2:19125861 Bpe15g00474 Bpe-Chr15:16079990 3.00E-57 dispersed
Bpe14g00373 Bpe-Chr14:3539637 Bpe02g01628 Bpe-Chr2:19125861 6.88E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g310 . . . . . . . . Cmo04g02452 Cmo15g00713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00186 . . Bda13g01491 Bpe02g01628 Bpe14g00373 . Bma02g00227 . . . . . Car04g02271 Car15g00645 Cpe01g02032 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006626 1 1 2 1 2 1 2 1 1 2 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01628 Bpe_Chr02 FPKM 7.019737 6.704542 9.575667 11.820456 14.872155 16.111115 12.86305 10.921729 10.008149 9.229083