Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01634 ATGGATTTAGCCATGGAGAATTCCTGCTGGGATCACCATAACTTATCTGGGTATACTTCTGGTAGCAGAACCACCATTGAAGAGGGAGTTGATGGTCACAACTGGACTAGCAACTGGTCGCCCATGGTGGATTGGGATACTTTCTCTGCTTGTCAAGACGATGACTTCAAAGGCTTTATGGAATCCATTTTTGAGGAAGAGCCAGTTTACCCTCCATCTTCAAGCAACTGCAATTCTTCGGGTTCGAGTACAGAGATGGTGTTGGTGGAGGATCAGGAAGAAACTGCCATCAATGGAGGAGGAGAAGATGTCAAAGGGTTGAGACTGGTTCACCTCCTGATCGCCGCCGCCGAGGCCATCATCGGAGCTAACGAACGACGGGAGCTTGCTCGGGTGATTTTGGTTCGGCTGAAAGAGTTGGTCTCTCTCTCCGACGGAACCACCATGGAAAGGCTTGCTGCGTATTTCACCGAAGCTTTGTACGGTTTGCTAGAGGGAACCCGGCTCAGTTCCGGTTCAAACAGTAGGTCCCACAACCGGTTCATAACTTGTGGACCCCACATTCATGATCACAATCCAACGGACGCGATCGCAGCGTTTCAGCTTCTTCAAGATATGTCACCCTACGTCAAGTTCGGTCATTTCACGGCCAATCAAGCAATTCTTGAAGCAGTGGGAGATGATCGGAGGGTCCACATTGTGGATTATGATATCATGGAGGGGATCCAATGGGCGTCGTTGATGCAAGCGTTGGTGTCTAGGAAAGACGGTACGATCGCGCCGCATCTTAGAATTACCGCGCTATCGAGAAGTGGGACCGCGCGAAGTTCAATCGGGACCGTCCAAGAAACAGGCCGCCGTCTGATTGCCTTCGCGGCGTCGATCGGTCAGGCGTTTTCGTTTCATCACTGTAGACTGGATTCCGAGGAGACATTTCGACCGTCCGCTTTGAAGCTAGTCAAAGGAGAATCGTTGATCATAAACTGCATGCTCCACCTCCCTCATTTCAACTACCGGGCCCCCGATTCGGTGGCTTCGTTTCTCTCTGGATCCAAGACCCTCAACCCGAGGCTGGTCACTCTGGTGGAAGAAGAAGTGGGACGCACGGACGGGACCTTTGCGTCTCGATTTATGGACTCATTGCACCATTACTGCGCCATCTACGACTCGCTTGAAGCTGGTTTTCCGATGAATTACCCGGCTCAAGCTCTGGTGGAGCGAGTGTTCATGGGTCCTCGGATATCCGGGACGCTGAGCCGTATCTACCGGGCAAGAGAGGACGAAGAACAAGGGTCGTGGGGGGACTGGTTGGGTGCAGCGGGGTATAGATCAGAGAGAATAAGCTTTGCCAATCACTGCCAAGCAAGACTGTTGGTGGGGCTGTTCAACGAGGGGTATAGAGTGGAGAATTTGGGTGAGAATAGGCTTGTTTTAGGATGGAAATCAAGACGTTTGCTCTCTGCGTCTGTTTGGACGTCTCCTTCTTCGTCTTCTTCTTAA 1500 51.6 MDLAMENSCWDHHNLSGYTSGSRTTIEEGVDGHNWTSNWSPMVDWDTFSACQDDDFKGFMESIFEEEPVYPPSSSNCNSSGSSTEMVLVEDQEETAINGGGEDVKGLRLVHLLIAAAEAIIGANERRELARVILVRLKELVSLSDGTTMERLAAYFTEALYGLLEGTRLSSGSNSRSHNRFITCGPHIHDHNPTDAIAAFQLLQDMSPYVKFGHFTANQAILEAVGDDRRVHIVDYDIMEGIQWASLMQALVSRKDGTIAPHLRITALSRSGTARSSIGTVQETGRRLIAFAASIGQAFSFHHCRLDSEETFRPSALKLVKGESLIINCMLHLPHFNYRAPDSVASFLSGSKTLNPRLVTLVEEEVGRTDGTFASRFMDSLHHYCAIYDSLEAGFPMNYPAQALVERVFMGPRISGTLSRIYRAREDEEQGSWGDWLGAAGYRSERISFANHCQARLLVGLFNEGYRVENLGENRLVLGWKSRRLLSASVWTSPSSSSS 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19156653 19158152 + Bpe009480.1 Bpe02g01634 99783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01634 499 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 27 492 IPR005202 -
Bpe02g01634 499 Pfam GRAS domain family 109 492 IPR005202 -
Bpe02g01634 499 PANTHER SCARECROW-LIKE PROTEIN 26 27 492 IPR030028 -
Bpe02g01634 499 ProSiteProfiles GRAS family profile. 100 492 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01634 - - - cit:102620887 612.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00902 Bpe-Chr2:7296721 Bpe02g01634 Bpe-Chr2:19156653 1.31E-21 dispersed
Bpe02g01634 Bpe-Chr2:19156653 Bpe11g01481 Bpe-Chr11:11017199 7.78E-58 dispersed
Bpe02g01634 Bpe-Chr2:19156653 Bpe14g00078 Bpe-Chr14:1265882 1.62E-48 transposed
Bpe02g01634 Bpe-Chr2:19156653 Bpe02g01376 Bpe-Chr2:17352167 2.00E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g294 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1387 . . . . . . . . Blo18g00188 . Bda01g01419 Bpe02g01634 . Bma01g00827 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011232 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20990 PF03514 GRAS 4.90E-97 CL0063 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01634 Bpe_Chr02 FPKM 23.403509 33.02523 39.153736 39.339973 45.499191 29.931768 37.153988 25.14292 24.422012 25.018431