Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01641 ATGTCTACTAATTCCGCGAGAGATTTTGATGATCAGGAGGCATTCAACGAATCTCATAGTGGCGAAGGATTATCAGCTGAAGTAATGTCAAATGATTTAACTATTAAAGAGGGCGTTGATGGAGATTTGACTACAGAAGAAGATTTGAACAATAATGTGCAAAGTCTCTCAGAAAAGTTATCAGCCGCTCTTATGAATTTTCATGCAAAAGAAGATTTGGTGAAGCAACACGCCAAAGTTGCTGAAGAAGCTATTGCCGGCTGGGAAAAGGCAGAAAATGAAGTGATAGTCTTAAAACAACAACTTGGGTCTGCAACTAAGCAAAAGTCAGCATTGGAAGATCAGGTGAGCCATCTTGATGCTGCCCTGAAGGAATGTGTTAGGCAACTAAGACAAACTAGAGATGAACAAGACCAAAAGATCCAGGAAGCAGTGAAAGATAAAGTAAATGATTTTGAATCTGCCAGACTGGATCTTGAGCAGCAGCTTCTAGAGATTCAAACCAAAGCAAAAGCTGCTCATAAAAAATCTGCTCATACTAATCTCGAACTTTCCTACAAGATTGAATCCTTGGAAAAGGAAAATTCATCCCTCAAGCACGAGCTTTATGTGCAGTCCAAGGAGCTTGAAATCCAGACTATTGAGAGAGATTTAAGCACACAAGCAGCTGAAACTGCTAGCAAGCAGAATCTAGAAAACTTAAAGAAGGTAGCCAGGCTTGAGGCTGAATGCAGGAGACTAAAAACCAGAGCCACTCCACCTTCCTCCACTTACGTCGAATCTCTCACTGATAGTCAATCAGATGGTGGAGAGCGTTTGACTGCTGTGGATATTGACACTCATAAGATCCAATTTAAGAACGAAAAGGGTACTGTCAGTAATTTACCCTCTTGCATTGAAATATCTCTCATGGATGATTTTCTCGAAATGGAACGGCTTGCTGCCATGCCTGAGTCTGAAACTGGAGATGTTTGTGTAGGATCAGAAGCCATTGATAAAGCCATTTCCTTAGAAAGTTCCTTGAGAGTTGAAATTGAGACATTGATGTCACAGACGATGGAAATGGAAGAGAAGCTAGAGAAGATGGAAGATTTGAATGCTGAACTAGAAGAGATGTTGGTCAAGATGAAAGAAGAGAAAGACAAACTGGAACAGAAGTTAGAAAAGATGAAAGAAGAGAAAGACGAACTGGAAAACAGGTTAGAAGAGATGAAAGAAGAGAACCATGAGCTAGAAGAGAAGTTCGAGAAAATAAACACAGACAAAGCTGATATGGAGATTTCTCTTGACCAAAGTAAAGACAGCATTAAGAAATCAGAACTTCAGCTGAAGGAAGCAGAAAAAAAGATGGAAGAGCTCCAACAGGAGCTAATTATTGCAAATGACTCAAAACAAAGTATGGAAACTCTACTAGGAATTGTGGAAGCCGAATCTCAAACCCTGTCGGAAAAGTTTATTTCGCTGGAACATGAAGTCGAGAAGGAGAGAATTTTTTCGGAGGAAATGAAAATCCAGTGCCATGAATTAGAGGAGGAACTGATTAGAATGAAAGAAGATAAAATCAGGCAAATGACAAAAAAAGAGCCAAAGATAAAGCAGGAGGACCTGGCTGCAGCTGCCGGAAAACTAGCCGATTGTCAAAAGACGATAGCGTCCCTCGGGAATCAACTCAAATCTCTAGCAACATTAGACGACTTTCTAACTGACACGTCATCAGTAGCGAAACTCTCCGAAGGTATAAGCCAACTTTCGAAAGCTGGTGCACACAAGCACCAACAGTCAAATGGATCGTTTTCGCCGAAAATAGTGGATTACTTGGAAGTAGTAGATGTTACTCCAAATAGTAAGAGTGAAGATGACTCTCCACCTTCATGGACATCTTCCTCGGCCTCTCCAGTTTTAGTAGCTCATGTTAGTTCCGAGAAAAACCGAAACGGGTTTGCCAAGTTTTTCTCGAGGACTAAAAGTGGAATAAGACTGGAGATTTAG 1989 40.72 MSTNSARDFDDQEAFNESHSGEGLSAEVMSNDLTIKEGVDGDLTTEEDLNNNVQSLSEKLSAALMNFHAKEDLVKQHAKVAEEAIAGWEKAENEVIVLKQQLGSATKQKSALEDQVSHLDAALKECVRQLRQTRDEQDQKIQEAVKDKVNDFESARLDLEQQLLEIQTKAKAAHKKSAHTNLELSYKIESLEKENSSLKHELYVQSKELEIQTIERDLSTQAAETASKQNLENLKKVARLEAECRRLKTRATPPSSTYVESLTDSQSDGGERLTAVDIDTHKIQFKNEKGTVSNLPSCIEISLMDDFLEMERLAAMPESETGDVCVGSEAIDKAISLESSLRVEIETLMSQTMEMEEKLEKMEDLNAELEEMLVKMKEEKDKLEQKLEKMKEEKDELENRLEEMKEENHELEEKFEKINTDKADMEISLDQSKDSIKKSELQLKEAEKKMEELQQELIIANDSKQSMETLLGIVEAESQTLSEKFISLEHEVEKERIFSEEMKIQCHELEEELIRMKEDKIRQMTKKEPKIKQEDLAAAAGKLADCQKTIASLGNQLKSLATLDDFLTDTSSVAKLSEGISQLSKAGAHKHQQSNGSFSPKIVDYLEVVDVTPNSKSEDDSPPSWTSSSASPVLVAHVSSEKNRNGFAKFFSRTKSGIRLEI 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19195947 19199427 + Bpe009486.1 Bpe02g01641 99790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01641 662 Coils Coil 181 208 - -
Bpe02g01641 662 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 1 661 - -
Bpe02g01641 662 Coils Coil 345 470 - -
Bpe02g01641 662 Pfam Filament-like plant protein, long coiled-coil 70 169 IPR008587 -
Bpe02g01641 662 Pfam Filament-like plant protein, long coiled-coil 175 248 IPR008587 -
Bpe02g01641 662 Pfam Filament-like plant protein, long coiled-coil 406 562 IPR008587 -
Bpe02g01641 662 SUPERFAMILY Tropomyosin 353 534 - -
Bpe02g01641 662 Coils Coil 46 66 - -
Bpe02g01641 662 Coils Coil 123 169 - -
Bpe02g01641 662 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 661 - -
Bpe02g01641 662 Coils Coil 499 519 - -
Bpe02g01641 662 MobiDBLite consensus disorder prediction 251 270 - -
Bpe02g01641 662 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01641 - - - csv:101206243 563.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01641 Bpe-Chr2:19195947 Bpe10g00221 Bpe-Chr10:8415882 3.21E-95 dispersed
Bpe02g01641 Bpe-Chr2:19195947 Bpe06g00272 Bpe-Chr6:13643133 5.53E-101 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g263 . . . . . . . . . Cmo15g00692 . . . . Sed01g3126 . . Bhi04g01916 Tan11g1279 Cmetu03g0859 . Hepe02g2273 . Lcy10g1224 . . . . . . . . . . . . . . Cme03g00560 . . . Bda01g01427 Bpe02g01641 . Bma01g00819 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g00801 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003586 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01641 Bpe_Chr02 FPKM 6.276384 7.074434 9.537367 10.061798 10.373293 9.208688 9.241098 15.511823 15.859819 15.758461