Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01644 ATGGTGGATTCTAAGGTGTTCCTAATCTCCAGGTTAGCGCAGTGGAGGATCGATAAATTCGGTCTCTCCACTCACAAGAAATCCGAGCCCTTCAATGTCGGATTATGGAACTGGATCTTGACCGTGGAGAAGAGCCATTATCTCTACATTCGCTTATTTCCAGAGCCGTCAAAGGTCTCCAGAGAGCAGCCTCCGTTTGCTCGTTTCATTCTTCGAGTCTCTGACCATGGGCCTAACTGTAAACCCTATGCTTCTCCCGTTTACGAGAGACTTTTTCGAACCAGTGAAGACTTTGTTTGGTCTGTTGATGCCAGTTTTCATGGCCTACTTGTCATTGATGTGGAATTTTTGGACCTTAAGATTATCCCTCAAAATGGAGGAGAATTGAAGTCCATATGGCCCAGTTATGGAATTGAATACATTTCAACGCAAACAACACTTACGCGGCTCTCTCGCATGTTCTCCGAGGCCATACATGCTGATGCTACAATCAATATGGCTGATGGCAGTTTAAGCGCCCACAAGGCAATTTTATCAGCAAGTTCTCAAGTTTTTCAGAGCATGTTCCATCACGATCTGAAGGAAAAAGAGTCTTCTGCTATCCAAATCGAAGACATGTCCTTAGAAATAGGCACTGTCCTATTAAGCTATTTGTACGGTACTATCAAACAAGAAGATTTTTGGAAGTACAGGATTTCCCTGCTCGGAGTAGCAAACAAGTATGTCATCGTCGACCTAAAAGATGCGTGCGAGGAAAGCCTGATGGAGGACATCAATTCAGGCAATGTTCTCGAGCGATTACAAGAAGCATGGTTGTACCAGCTCGACAAACTGAGAAAAAGTTGTATGATGTATTTGTTTGATTTCGGTAAAGTTTACGACATCAAAGACGAAATAAGCAGCTTCTGCAGGCATGCAGACAAGGAGTTGGTGGTGGAAATATTTCAAGAGTTGCTCTCTGTCTGGAGACCTTCCTAA 978 43.66 MVDSKVFLISRLAQWRIDKFGLSTHKKSEPFNVGLWNWILTVEKSHYLYIRLFPEPSKVSREQPPFARFILRVSDHGPNCKPYASPVYERLFRTSEDFVWSVDASFHGLLVIDVEFLDLKIIPQNGGELKSIWPSYGIEYISTQTTLTRLSRMFSEAIHADATINMADGSLSAHKAILSASSQVFQSMFHHDLKEKESSAIQIEDMSLEIGTVLLSYLYGTIKQEDFWKYRISLLGVANKYVIVDLKDACEESLMEDINSGNVLERLQEAWLYQLDKLRKSCMMYLFDFGKVYDIKDEISSFCRHADKELVVEIFQELLSVWRPS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19205837 19207926 - Bpe009489.1 Bpe02g01644 99793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01644 325 PANTHER OS08G0103600 PROTEIN 1 324 - -
Bpe02g01644 325 SUPERFAMILY POZ domain 144 256 IPR011333 -
Bpe02g01644 325 ProSiteProfiles BTB domain profile. 160 219 IPR000210 GO:0005515
Bpe02g01644 325 Pfam BTB/POZ domain 152 256 IPR000210 GO:0005515
Bpe02g01644 325 PANTHER OS08G0495500 PROTEIN-RELATED 1 324 IPR044714 -
Bpe02g01644 325 Gene3D Potassium Channel Kv1.1; Chain A 138 287 IPR011333 -
Bpe02g01644 325 SMART BTB_4 160 258 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01644 K10523 SPOP; speckle-type POZ protein - ming:122062136 481.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01644 Bpe-Chr2:19205837 Bpe11g00605 Bpe-Chr11:4613739 1.29E-110 dispersed
Bpe15g01224 Bpe-Chr15:20858210 Bpe02g01644 Bpe-Chr2:19205837 4.32E-09 dispersed
Bpe02g01644 Bpe-Chr2:19205837 Bpe06g00481 Bpe-Chr6:16075237 1.33E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g259 . . . . . . . . Cmo04g02476 . Cma01g01052 . Car01g00927 . . . . Bhi04g01910 Tan11g1271 . . Hepe02g2263 . . Cla08g00595 . Cec08g0599 Cco08g0709 Clacu08g0719 . Cre08g0529 Cone4ag1411 Cone7ag1527 . . . . . Cme03g00549 . Blo18g00183 . . Bpe02g01644 . Bma01g00813 . Sed07g2802 Cmo01g01092 . . . Car04g02293 . Cpe01g02054 Cpe02g00843 Bhi09g01832 Tan01g3241 Cmetu01g1881 . . Mch11g1322 . . . . . . . . Lsi08g00438 . Chy03g00794 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007181 1 4 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20992 PF00651 BTB 8.20E-19 CL0033 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01644 Bpe_Chr02 FPKM 0.816535 1.010845 64.588341 61.165089 222.215134 225.252518 216.83136 11.995091 11.668206 11.247694