Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01658 ATGTTCTTGGCAACGACGACTTATATTTGTGTAGAGGTGGTGGATCGGAATGGCAAGTCCTCCCTTCTTTCCATCGTCAAAGCGTTCGACTCCGTTCTTGCTGTCTATGAAGGTTTCTGCAATTTGAAACAGGTGGATCTCAAGCTTAAGATATGCAGAGGAACATCAGCTCAGAAAGTTTTAGCACGGGAAGCAAATTCTTATAATGCGACTAATGTGATAGTCGGAACTGCTCGTAATCGCCATAAAATCCGGTCATCTACCTCGGTTGCTAAGTATTGTGCCAAGAAACTTTCTAAGGATTGTTGGGTTATTGCTGTAAAAAATGGGAAAGTGGTTTTCCAAAGCTCTTCGACCAAGAATTTTCGCGCCCAAGGAATTGAAGAAAGTGGTGGAAATGGTTTCCTTGATTCACTGCACAGGTCATTGAGTAATTCTTCCCAAATATTAAATGATGATAATAATGCCATTGGTGTAAAGGAAAACATTGATCTACCTAGTAAGAACCTGATCAAACAGAGTTGTACAATTTGTTCTCGGGCTTCTGCATTGCCGACTCATACTGTCGACCAATCTTTAAGAAAGTTTTTTGGTGATGGGGTTGAACCTGAAAACTCTTTGGCCATGGTACCAGTTCAGAAACTAGAAGAGGGATCAACTTCTATCAAGATCTTGATTAAAGATTTGCCTGGACTAAAACCTGGTTGGCCACTTCTTCGGCATTCTGATCGATCTCTAGGCCGACGTGATTCCAATATATCATTAGTTCGGAAAATATCTGTTGCTCAGTGGGCTTTGAAGTTACCAACAAGGTGCCCTTACAGTGGGACTTCGAATCACAATCAGACCAGTTCCAATTCATTTCTGAATCTAGAGAGAAATAGTGGTGCAATTGTGCCGGTCGGTCTTGAACCGGCGTCTTCTCCTCGTTTCCCTGATCAAAATTTAATGGTATTACCTAAAGAATTGGATGATCTTCATAAAAAGCATTCATCGACTTGCCGATTGTTTAAGTATCAGGAACTTCTCCAAGCAACTTCTAATTTCTTCGCTGATAATTTGATTGGGAAAGGAGGTAGCAGCCAAGTTTATAGAGGCTGCCTTTCAGATGGGAAGGAAATAGCTGTGAAGATCTTAAAGTCATATGAAGATGTTCTCAAGGAGTTTGTTTTAGAAATAGAAATTATTACTGCTTTGCATCACAAGAATATCATTTCCCTTTTAGGATTCTGCTATGAAGACAACAAGCTCTTGTTGGTGTATGATTTTTTATCGAGAGGAAGCCTAGAAGATAACCTCCATTGTGAGTTGAAGTCAAATGGTCCCATAAACATCTCTTCTCTAAAATCAGGAAATAGAAAAGATTCAAGTGCATTTGGTTGGAGTGAAAGATATAACGTAGCTCTCGGCGTGGCCGAAGCTTTAGCTTATCTTCACGACGACAGAGATCAACCTGTGATTCATAGAGATGTAAAATCGTCTAATGTGTTATTATCCGAAGATTTTGAGCCACAGCTCTCAGATTTCGGACTAGCTAAATTGGGGTCAACTTCCTCCGCGCCTATAACTTGCACTGATGTGGCTGGAACTTTTGGTTACTTGGCCCCGGAGTACTTTATGCACGGAAAAGTAAACGAAAAAATTGATGTCTATGCTTTCGGAGTAGTACTCCTTGAGCTTGTTTCGGGAAGAAAACCTATATGCAACGACTATCCTAAAGGCCAAGAGAGCCTAGTTATGTGGGCAAAGCCAATTCTAAATGGTGGAAAGGTGTCCCAATTGCTTGATCCAAGATTGGGGTGTAACTATAACAAGGATCAGATGGAGAGGCTTGTTTTGGCGGCCACTCTTTGTATCAGGCGCGCTCCTCGAGCTAGACCTCAAATGAGCTTGGTTTTGAAGCTCCTTCGAGGTGATGTCGAAGTAACCAAATGGGCGAGACTTCAAGTCAACGAGGTAGATGAATCCGAAATGCTCGACGATGAAACATTTCCACGTTGTTATCTCCAGTCACATCTCAACCTCGCGTTGCTGGACGTGGAGGATGACTCTCTGTCCCTGAGTAGCATTGAGCAAACTATATCATTAGAAGACTACCTGGGGGGAAGGTGGAGCCGTTCGTCGAGCTTAGACTAA 2136 42.13 MFLATTTYICVEVVDRNGKSSLLSIVKAFDSVLAVYEGFCNLKQVDLKLKICRGTSAQKVLAREANSYNATNVIVGTARNRHKIRSSTSVAKYCAKKLSKDCWVIAVKNGKVVFQSSSTKNFRAQGIEESGGNGFLDSLHRSLSNSSQILNDDNNAIGVKENIDLPSKNLIKQSCTICSRASALPTHTVDQSLRKFFGDGVEPENSLAMVPVQKLEEGSTSIKILIKDLPGLKPGWPLLRHSDRSLGRRDSNISLVRKISVAQWALKLPTRCPYSGTSNHNQTSSNSFLNLERNSGAIVPVGLEPASSPRFPDQNLMVLPKELDDLHKKHSSTCRLFKYQELLQATSNFFADNLIGKGGSSQVYRGCLSDGKEIAVKILKSYEDVLKEFVLEIEIITALHHKNIISLLGFCYEDNKLLLVYDFLSRGSLEDNLHCELKSNGPINISSLKSGNRKDSSAFGWSERYNVALGVAEALAYLHDDRDQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKLGSTSSAPITCTDVAGTFGYLAPEYFMHGKVNEKIDVYAFGVVLLELVSGRKPICNDYPKGQESLVMWAKPILNGGKVSQLLDPRLGCNYNKDQMERLVLAATLCIRRAPRARPQMSLVLKLLRGDVEVTKWARLQVNEVDESEMLDDETFPRCYLQSHLNLALLDVEDDSLSLSSIEQTISLEDYLGGRWSRSSSLD 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19285046 19288075 + Bpe009499.1 Bpe02g01658 99807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01658 711 CDD STKc_IRAK 355 636 - -
Bpe02g01658 711 SUPERFAMILY Protein kinase-like (PK-like) 330 636 IPR011009 -
Bpe02g01658 711 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Bpe02g01658 711 Pfam Protein kinase domain 353 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g01658 711 SMART serkin_6 349 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g01658 711 Gene3D Transferase(Phosphotransferase) domain 1 426 656 - -
Bpe02g01658 711 PANTHER - 10 694 - -
Bpe02g01658 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Bpe02g01658 711 ProSiteProfiles Protein kinase domain profile. 349 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g01658 711 Gene3D Phosphorylase Kinase; domain 1 318 423 - -
Bpe02g01658 711 PANTHER OS08G0249100 PROTEIN 10 694 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01658 - - - jre:109004828 891.723
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00694 Bpe-Chr1:5128835 Bpe02g01658 Bpe-Chr2:19285046 4.66E-87 dispersed
Bpe02g01658 Bpe-Chr2:19285046 Bpe10g00266 Bpe-Chr10:9956217 6.26E-169 dispersed
Bpe14g00084 Bpe-Chr14:1362512 Bpe02g01658 Bpe-Chr2:19285046 2.89E-77 dispersed
Bpe02g01658 Bpe-Chr2:19285046 Bpe06g00305 Bpe-Chr6:14360402 1.42E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g209 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . . Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . Csa04g01957 . Cme03g00489 Blo17g00166 Blo18g00172 . Bda13g01465 Bpe02g01658 . Bma01g00797 . . . . . . Car04g02316 Car15g00595 Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . Chy03g00749 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004130 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 0 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63194 PF00069 Pkinase 1.30E-41 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01658 Bpe_Chr02 FPKM 1.802083 0.0 0.0 0.0 2.302552 3.946285 0.0 3.035887 3.34981 0.0