Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01667 ATGGAGAATGAATCTGTAGTTAAAGATGAATATCCAGCTTCAAGCTCTCTCGGAAAGATTATTATCGTCTCGTCCATTGCCGCCGGAGTTCAGTTTGGATGGGCTCTGCAACTCTCGCTGTTGACGCCGTATGTTCAACAGCTCGGAGTTCCCCACACATGGGCTGCCTTTATCTGGCTTTGCGGCCCTATGTCTGGTCTACTAGTTCAGCCTACCGTCGGATACTACAGCGACCGGTGTACCTCTCCACTCGGCCGTCGACGTCCGTTCATCATCGCTGGAGCGTTCTTTGTTGCCCTCGCCGTCTTCCTTATCGGTTTTGCCGCTGACATAGGCCATGCGGCTGGGGACGATTTATTGAAGGAAACAAAGCCACGAGCAGTCGCCATTTTCGTCGTTGGTTTCTGGATCCTTGACGTTGCGAACAACATGCTGCAAGGACCTTGCAGAGCTTTTCTAGCTGATCTTTCAGGTAGAGACTACAAGAAAATGAGCCTCGCTAATGGCTTCTTCTCCTTCTTCATGGCCGTCGGAAACGTTCTTGGTTACGCCGCCGGTTCGTACAGCGGCCTCCATAAGTACTTTCCCTTTACCGAAACAAAAGCCTGCGACGTTTACTGTGCAAATTTAAAGTCGTGCTTCATCATCGACATCATCCTCCTCATCGCCGTCACCCTGTTCGCTGTTACGATGGTGAGCGAAATTCCGTTTGTGAATAAGAAGGAGAAGGACGAAGCGGAGCCATTCTTTGGGCAACTATCATCTGCATTCAAGCAACTTTCTAAGCCCATGTGGATTCTCTTCCTCGTGACTGGTTTGAACTGGATCGCTTGGTTCCCCTTCATTTTGTACGACACTGACTGGATGGGTCTGGAAGTGTATGGAGGAAAGCCCAAGGGAACGGCCGACCAAGTGAGTATTTACGACCTTGGTGTGCGAGCTGGGTCTCTCGGTTTGATGATTAACTCCATCGTCCTTGCTTGTGCGTCGCTCTTCGTGGAGCCCATTGGGCGTGTATTGAAGGGCGTGAAGAACTGGTGGGGCGTTGTTAACCTTATCCTGGCCGTCGCACTGGCTCTCACCGTGCCGGTGACCAAGGCAGCCCAGCACTGGAGATCTGTCAATGGCCTCCACCCTCCTCCCTCCAATATCAAGGCCGGAGCTTTGGCCATCTTTGCTGTTTTGGGCATTCCTCTTTCGGTGAATTACAGTGTTCCATGGGCTTTGGCATCCATCTTCTCCGTCACCTGCGGCGCTGGACAAGGGCTTTCTCTAGGCCTGTTGAACTTGGCCATCGTCATCCCACAGATTATCGTGTCTGTGGTGAGCGGTCCACTCGACGCAGCATTCGGCGGGGGTAACTTGCCGGCGTTCATGTTGGGTGCAGTGGCGGCAGCCGTTAGCGCAGTGCTGGCTCTGACAGTACTTCCAAGAACACCAAGACAAACAAGCTCCTTCTTTACCATGGGACACTGA 1476 52.44 MENESVVKDEYPASSSLGKIIIVSSIAAGVQFGWALQLSLLTPYVQQLGVPHTWAAFIWLCGPMSGLLVQPTVGYYSDRCTSPLGRRRPFIIAGAFFVALAVFLIGFAADIGHAAGDDLLKETKPRAVAIFVVGFWILDVANNMLQGPCRAFLADLSGRDYKKMSLANGFFSFFMAVGNVLGYAAGSYSGLHKYFPFTETKACDVYCANLKSCFIIDIILLIAVTLFAVTMVSEIPFVNKKEKDEAEPFFGQLSSAFKQLSKPMWILFLVTGLNWIAWFPFILYDTDWMGLEVYGGKPKGTADQVSIYDLGVRAGSLGLMINSIVLACASLFVEPIGRVLKGVKNWWGVVNLILAVALALTVPVTKAAQHWRSVNGLHPPPSNIKAGALAIFAVLGIPLSVNYSVPWALASIFSVTCGAGQGLSLGLLNLAIVIPQIIVSVVSGPLDAAFGGGNLPAFMLGAVAAAVSAVLALTVLPRTPRQTSSFFTMGH 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19344374 19346010 - Bpe009506.1 Bpe02g01667 99816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01667 491 TIGRFAM GPH_sucrose: sucrose/H+ symporter 16 480 IPR005989 GO:0005887|GO:0008515|GO:0015770
Bpe02g01667 491 PANTHER SUGAR TRANSPORTER 14 484 - -
Bpe02g01667 491 Pfam MFS/sugar transport protein 32 277 - -
Bpe02g01667 491 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 14 484 - -
Bpe02g01667 491 CDD MFS_SLC45_SUC 20 459 - -
Bpe02g01667 491 Gene3D MFS general substrate transporter like domains 17 476 IPR036259 -
Bpe02g01667 491 SUPERFAMILY MFS general substrate transporter 20 482 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01667 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:116401998 671.003
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00155 Bpe-Chr2:1078796 Bpe02g01667 Bpe-Chr2:19344374 2.21E-163 dispersed
Bpe02g01667 Bpe-Chr2:19344374 Bpe14g00418 Bpe-Chr14:3857880 0 dispersed
Bpe02g02352 Bpe-Chr2:23995825 Bpe02g01667 Bpe-Chr2:19344374 2.94E-135 transposed
Bpe14g00417 Bpe-Chr14:3854433 Bpe02g01667 Bpe-Chr2:19344374 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe14g00418 . 10 492 Sucrose Transporter Gene Family AT1G22710 63.7 5.1e-178 620.9
Bpe14g00417 . 17 480 Sucrose Transporter Gene Family AT1G22710 65.8 4.4e-177 617.8
Bpe02g01667 . 17 490 Sucrose Transporter Gene Family AT1G22710 64.5 4.8e-176 614.4
Bpe14g00420 . 17 477 Sucrose Transporter Gene Family AT1G22710 62.8 2.0e-169 592.4
Bpe02g00155 . 28 492 Sucrose Transporter Gene Family AT1G22710 53.5 1.8e-146 516.2
Bpe14g00427 . 2 355 Sucrose Transporter Gene Family AT1G22710 58.4 3.5e-118 422.2
Bpe14g00417 . 9 477 Sucrose Transporter Gene Family AT2G14670 62.6 3.1e-172 601.7
Bpe02g01667 . 15 477 Sucrose Transporter Gene Family AT2G14670 64.1 5.3e-172 600.9
Bpe14g00418 . 9 477 Sucrose Transporter Gene Family AT2G14670 62.2 2.9e-170 595.1
Bpe14g00420 . 8 477 Sucrose Transporter Gene Family AT2G14670 60.6 1.9e-166 582.4
Bpe02g00155 . 24 492 Sucrose Transporter Gene Family AT2G14670 54.4 1.7e-146 516.2
Bpe14g00427 . 1 355 Sucrose Transporter Gene Family AT2G14670 56.9 7.8e-115 411.0
Bpe14g00417 . 10 400 Sucrose Transporter Gene Family AT1G66570 61.6 3.1e-142 501.9
Bpe02g01667 . 15 405 Sucrose Transporter Gene Family AT1G66570 63.1 5.3e-142 501.1
Bpe14g00418 . 10 405 Sucrose Transporter Gene Family AT1G66570 61.1 3.4e-141 498.4
Bpe14g00420 . 15 405 Sucrose Transporter Gene Family AT1G66570 60.8 4.6e-138 488.0
Bpe02g00155 . 24 420 Sucrose Transporter Gene Family AT1G66570 53.0 2.3e-121 432.6
Bpe14g00427 . 1 283 Sucrose Transporter Gene Family AT1G66570 55.4 2.2e-87 319.7
Bpe02g02352 . 155 611 Sucrose Transporter Gene Family AT2G02860 69.9 2.0e-184 642.1
Bpe02g01667 . 6 477 Sucrose Transporter Gene Family AT5G06170 62.7 1.2e-163 573.2
Bpe14g00418 . 8 477 Sucrose Transporter Gene Family AT5G06170 60.5 2.1e-160 562.4
Bpe14g00417 . 6 477 Sucrose Transporter Gene Family AT5G06170 61.0 2.7e-160 562.0
Bpe14g00420 . 5 477 Sucrose Transporter Gene Family AT5G06170 58.7 1.8e-156 549.3
Bpe02g00155 . 27 492 Sucrose Transporter Gene Family AT5G06170 51.3 2.0e-134 476.1
Bpe14g00427 . 1 355 Sucrose Transporter Gene Family AT5G06170 53.8 3.6e-104 375.6
Bpe14g00417 . 9 477 Sucrose Transporter Gene Family AT5G43610 61.8 1.6e-168 589.3
Bpe02g01667 . 15 477 Sucrose Transporter Gene Family AT5G43610 63.0 3.5e-168 588.2
Bpe14g00418 . 9 477 Sucrose Transporter Gene Family AT5G43610 61.4 1.8e-167 585.9
Bpe14g00420 . 9 477 Sucrose Transporter Gene Family AT5G43610 59.7 1.0e-162 570.1
Bpe02g00155 . 22 492 Sucrose Transporter Gene Family AT5G43610 53.1 6.7e-143 504.2
Bpe14g00427 . 1 355 Sucrose Transporter Gene Family AT5G43610 56.6 1.1e-113 407.1
Bpe02g00155 . 23 498 Sucrose Transporter Gene Family AT1G09960 73.2 1.9e-204 708.8
Bpe14g00417 . 20 482 Sucrose Transporter Gene Family AT1G09960 52.8 1.3e-136 483.4
Bpe02g01667 . 12 482 Sucrose Transporter Gene Family AT1G09960 52.3 2.4e-135 479.2
Bpe14g00420 . 11 483 Sucrose Transporter Gene Family AT1G09960 50.6 7.7e-134 474.2
Bpe14g00417 . 10 491 Sucrose Transporter Gene Family AT1G71880 61.6 9.4e-172 600.1
Bpe14g00418 . 8 491 Sucrose Transporter Gene Family AT1G71880 61.3 1.2e-171 599.7
Bpe02g01667 . 9 490 Sucrose Transporter Gene Family AT1G71880 61.3 6.7e-170 594.0
Bpe14g00420 . 10 477 Sucrose Transporter Gene Family AT1G71880 60.4 1.8e-162 569.3
Bpe02g00155 . 27 492 Sucrose Transporter Gene Family AT1G71880 54.5 3.9e-141 498.4
Bpe14g00427 . 1 369 Sucrose Transporter Gene Family AT1G71880 56.4 1.4e-114 410.2
Bpe02g01667 . 15 480 Sucrose Transporter Gene Family AT1G71890 62.2 3.5e-166 581.6
Bpe14g00417 . 10 492 Sucrose Transporter Gene Family AT1G71890 59.5 5.9e-166 580.9
Bpe14g00418 . 8 492 Sucrose Transporter Gene Family AT1G71890 59.3 5.0e-165 577.8
Bpe14g00420 . 15 477 Sucrose Transporter Gene Family AT1G71890 60.0 2.0e-161 565.8
Bpe14g00427 . 1 355 Sucrose Transporter Gene Family AT1G71890 56.4 1.2e-110 397.1
Bpe14g00417 . 10 491 Sucrose Transporter Gene Family AT1G71880 61.6 9.4e-172 600.1
Bpe14g00418 . 8 491 Sucrose Transporter Gene Family AT1G71880 61.3 1.2e-171 599.7
Bpe02g01667 . 9 490 Sucrose Transporter Gene Family AT1G71880 61.3 6.7e-170 594.0
Bpe14g00420 . 10 477 Sucrose Transporter Gene Family AT1G71880 60.4 1.8e-162 569.3
Bpe02g00155 . 27 492 Sucrose Transporter Gene Family AT1G71880 54.5 3.9e-141 498.4
Bpe14g00427 . 1 369 Sucrose Transporter Gene Family AT1G71880 56.4 1.4e-114 410.2
Bpe14g00418 . 10 492 Sucrose Transporter Gene Family AT1G22710 63.7 5.1e-178 620.9
Bpe14g00417 . 17 480 Sucrose Transporter Gene Family AT1G22710 65.8 4.4e-177 617.8
Bpe02g01667 . 17 490 Sucrose Transporter Gene Family AT1G22710 64.5 4.8e-176 614.4
Bpe14g00420 . 17 477 Sucrose Transporter Gene Family AT1G22710 62.8 2.0e-169 592.4
Bpe02g00155 . 28 492 Sucrose Transporter Gene Family AT1G22710 53.5 1.8e-146 516.2
Bpe14g00427 . 2 355 Sucrose Transporter Gene Family AT1G22710 58.4 3.5e-118 422.2
Bpe02g02352 . 155 611 Sucrose Transporter Gene Family AT2G02860 69.9 2.0e-184 642.1
Bpe02g00155 . 23 498 Sucrose Transporter Gene Family AT1G09960 73.2 1.9e-204 708.8
Bpe14g00417 . 20 482 Sucrose Transporter Gene Family AT1G09960 52.8 1.3e-136 483.4
Bpe02g01667 . 12 482 Sucrose Transporter Gene Family AT1G09960 52.3 2.4e-135 479.2
Bpe14g00420 . 11 483 Sucrose Transporter Gene Family AT1G09960 50.6 7.7e-134 474.2
Bpe02g01667 . 15 480 Sucrose Transporter Gene Family AT1G71890 62.2 3.5e-166 581.6
Bpe14g00417 . 10 492 Sucrose Transporter Gene Family AT1G71890 59.5 5.9e-166 580.9
Bpe14g00418 . 8 492 Sucrose Transporter Gene Family AT1G71890 59.3 5.0e-165 577.8
Bpe14g00420 . 15 477 Sucrose Transporter Gene Family AT1G71890 60.0 2.0e-161 565.8
Bpe14g00427 . 1 355 Sucrose Transporter Gene Family AT1G71890 56.4 1.2e-110 397.1
Bpe14g00417 . 9 477 Sucrose Transporter Gene Family AT5G43610 61.8 1.6e-168 589.3
Bpe02g01667 . 15 477 Sucrose Transporter Gene Family AT5G43610 63.0 3.5e-168 588.2
Bpe14g00418 . 9 477 Sucrose Transporter Gene Family AT5G43610 61.4 1.8e-167 585.9
Bpe14g00420 . 9 477 Sucrose Transporter Gene Family AT5G43610 59.7 1.0e-162 570.1
Bpe02g00155 . 22 492 Sucrose Transporter Gene Family AT5G43610 53.1 6.7e-143 504.2
Bpe14g00427 . 1 355 Sucrose Transporter Gene Family AT5G43610 56.6 1.1e-113 407.1
Bpe14g00417 . 10 400 Sucrose Transporter Gene Family AT1G66570 61.6 3.1e-142 501.9
Bpe02g01667 . 15 405 Sucrose Transporter Gene Family AT1G66570 63.1 5.3e-142 501.1
Bpe14g00418 . 10 405 Sucrose Transporter Gene Family AT1G66570 61.1 3.4e-141 498.4
Bpe14g00420 . 15 405 Sucrose Transporter Gene Family AT1G66570 60.8 4.6e-138 488.0
Bpe02g00155 . 24 420 Sucrose Transporter Gene Family AT1G66570 53.0 2.3e-121 432.6
Bpe14g00427 . 1 283 Sucrose Transporter Gene Family AT1G66570 55.4 2.2e-87 319.7
Bpe14g00417 . 9 477 Sucrose Transporter Gene Family AT2G14670 62.6 3.1e-172 601.7
Bpe02g01667 . 15 477 Sucrose Transporter Gene Family AT2G14670 64.1 5.3e-172 600.9
Bpe14g00418 . 9 477 Sucrose Transporter Gene Family AT2G14670 62.2 2.9e-170 595.1
Bpe14g00420 . 8 477 Sucrose Transporter Gene Family AT2G14670 60.6 1.9e-166 582.4
Bpe02g00155 . 24 492 Sucrose Transporter Gene Family AT2G14670 54.4 1.7e-146 516.2
Bpe14g00427 . 1 355 Sucrose Transporter Gene Family AT2G14670 56.9 7.8e-115 411.0
Bpe02g01667 . 6 477 Sucrose Transporter Gene Family AT5G06170 62.7 1.2e-163 573.2
Bpe14g00418 . 8 477 Sucrose Transporter Gene Family AT5G06170 60.5 2.1e-160 562.4
Bpe14g00417 . 6 477 Sucrose Transporter Gene Family AT5G06170 61.0 2.7e-160 562.0
Bpe14g00420 . 5 477 Sucrose Transporter Gene Family AT5G06170 58.7 1.8e-156 549.3
Bpe02g00155 . 27 492 Sucrose Transporter Gene Family AT5G06170 51.3 2.0e-134 476.1
Bpe14g00427 . 1 355 Sucrose Transporter Gene Family AT5G06170 53.8 3.6e-104 375.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01667 Bpe_Chr02 FPKM 0.990496 1.827983 4.204073 4.334086 1.155686 0.619373 0.837967 7.884759 8.108769 6.688394