Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01672 ATGGCGGATGTGCTGCTGATGGGGGAGATTGAAGCCACCGCCACTCAGCTCGGAATCGATCTCTCCCAAATCGATCTTGAGTCCATTCGCCTTCCTCCAGGTGAAGACTTTGGCATCATTAGTGATGATGAGGATGTCTTGCAAGAGGAGAATCTGGAGTTTGATACTGGATTTGGAAACATTATTGTTGTGGATAATCTTCCTGTTGTTCCCCGGGAAAAATTTGAGAAGCTTGAAGGTGTAATTCGCAAGATATACAGTCAAATTGGAATAATAAAGGAGGAGGGTCTTTGGATGCCTGTTGATCCTGAGACGCACAAAACTTTAGGTTACTGCTTCATTGAGTACAATGACCCCCAGGAAGCTGAGCTTGCTAAGGAGAAAACAAATGGGTACAAACTGGACAGAGCACACATATTTACTGTTAGCATGTTTGATGATTTCGATAAATTTATGAAGGTTCCTGATGAGTGGGCCTCTCCAGAAAGTGTTTCATACTCTCCGGGGGAGAATCTTCAAAGTTGGCTTACAGATGAGAAAGCTCGCGATCAGTTTGTGATTCGTGCTGGTAATGATACTGAAGTTTTATGGAATGATGCCAGACATATGAAGCCTGACCCTGTGTACAAGCGTACATTTTGGACTGAAGGTTTTATCCAGTGGTCATCTCTTGGGACTTACTTGGCAACAGTTCACCGCCTAGGTGCTGCTGTTTGGGGTGGTGCCAGTACCTTTAATCGTTTAATGCGTTATGCTCATCCTCAGGTTAAGCTGATTGATTTTTCACCCAGTGAGAAATATTTAGTAACTTACAGCAGCCATGAGCCAAGCAATCCTCGAGATACTAATAGGATTGTGATCAACATATTTGATGTTAGAACTGGTAAAGTAATGCGGGATTTCAAGGGAAGTCCGGATGAATTTGCTGTTGGAGGAACAGGAGCTGTTGCAGGAGTATCTTGGCCAGTTTTTAGATGGGGTGGAAAGAATGATAAATATTTTGCCAGGATTGGAAAAAATTTAATCTCTGTTTATGAAACGGAAACTTTTTCTCTGGTTGACAAGAGGTCTTTGAAGGTTGACAATGTCGTGGATTTTAGTTGGTCTCCAACCGATCCAATTATTGCAATTTTTGTTCCCGAGCTAGGTGGCGGCAACCAACCTGCTAGGGTTAGCCTTGTCCAAATTCCTAGCAAAGAAGAAATCAGGCAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTATTGGCACAGCAATGGTGATTATCTTGCTGCTAAGGTTGATCGTTATACAAAGACAAAAAAGAGTACATACACTGGGTTTGAGCTTTTCCGCATCAAAGAACGTGATATTCCAATTGAGGTTTTGGAGCTTGAAAACAAGAATGATAAAATTATTGCTTTTGCCTGGGAGCCCAAGGGCCACAGATTTGCTGTTATTCACGGTGATAACCCCAGGCCAGACATAAGTTTTTATTCAATGCGATCTGCTCATAATACGGGTCGAGTTTCGAAGCTCACCACTCTCAAAGGGAAACAAGCAAATGCTCTTTTCTGGTCACCAGCTGGGCGTTTTATTATTCTTGCTGGACTGAAGGGTTTCAACGGACAGCTTGAGTTTTATAATGTTGATGAGCTTGAAACCATGGCTACGGCTGAGCATTTCATGGCGACAGACATTGAATGGGATCCCACTGGAAGGTGGTATGTTGCAACTTCAGTGACTTCTGTTCATGAGATGGAAAATGGTTTCAACATATGGTCTTTTAATGGGAAGCTACTGTATAGAATATTGAAGGATCATTTCTATCAGGGCCGTGGTGGACCTGGACTGATTGCGAATGTTGGCACTCAAAAACAAATCGGAGGCACAACAGCTATGGGAGGTTCTAGTCAACAGCAACCAATTGGTCTTCATATAGCTATGACTGCTGCAGCAGTTATGACTGGAGCTCTTGGAAGTTCTCAAGTTGGTATGCCGCCAAATCAAAATGTTTTGCAGAATTCGTCAATGGTCAATGATCCTTTAACTCTTCATCTGTCCAAACTATCCAGGAGTGAGCTTACAGACATTATGTCAGCGTTGAAGGGCCTTGCTACGCAGAACAAGAAACTGGCTCGTCAATTATTGCTTGGGAGGCCACAGTTATTAAGAGCTCTTTTTCAGGCACAGATAATGCTTGGAATGGTCTCTCCACAAGTGTTACAAATGCCAAATTTACGGCAAGCTTCTGGTCAAATTTTGCATCCTCCCATGAATGAAAATCAGCAGAGTCAGCTGTCCTCACCTCAGACTCTCACCAGGTTGCCACCTCTTGTTCCAAATAAGGTGCAATCTGCATTAACGCCTAGCATGCAAGAAGGTCAAGTTTCTATCCTGCCTCAGAAGGCTTCCATCCATAATCAGTTTTCTTCTCCTGCGCAACCTATCACGCATCCTCAAATTCCTGCCCATTCCGGTGTCTCTCATTTTCCTATGATACAACATTTACCTATTAGACCGCAAGTTCAAATGGAAAACCCGACTTCCTCTAACCAGCAGATGCAGTTCCCAACACCACAACATCCTGGGCAGTCTTCTTGGATGCTAAACCAAAATATTCCCTCACAGTCGTCTTCTCTTTTACCTCGTCCTCCCCCATCCGATGCAGGGTTTCAGGTGCCAAATTTTTTTTTCAACTTTTTAGAGTTTATCTATTTATTTTATTTTATTAGAGAAAAACTAACAGGAGATCCAAAACTGGAAAATTAA 2754 42.67 MADVLLMGEIEATATQLGIDLSQIDLESIRLPPGEDFGIISDDEDVLQEENLEFDTGFGNIIVVDNLPVVPREKFEKLEGVIRKIYSQIGIIKEEGLWMPVDPETHKTLGYCFIEYNDPQEAELAKEKTNGYKLDRAHIFTVSMFDDFDKFMKVPDEWASPESVSYSPGENLQSWLTDEKARDQFVIRAGNDTEVLWNDARHMKPDPVYKRTFWTEGFIQWSSLGTYLATVHRLGAAVWGGASTFNRLMRYAHPQVKLIDFSPSEKYLVTYSSHEPSNPRDTNRIVINIFDVRTGKVMRDFKGSPDEFAVGGTGAVAGVSWPVFRWGGKNDKYFARIGKNLISVYETETFSLVDKRSLKVDNVVDFSWSPTDPIIAIFVPELGGGNQPARVSLVQIPSKEEIRQKNLFSVSDCKMYWHSNGDYLAAKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSAHNTGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRWYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFYQGRGGPGLIANVGTQKQIGGTTAMGGSSQQQPIGLHIAMTAAAVMTGALGSSQVGMPPNQNVLQNSSMVNDPLTLHLSKLSRSELTDIMSALKGLATQNKKLARQLLLGRPQLLRALFQAQIMLGMVSPQVLQMPNLRQASGQILHPPMNENQQSQLSSPQTLTRLPPLVPNKVQSALTPSMQEGQVSILPQKASIHNQFSSPAQPITHPQIPAHSGVSHFPMIQHLPIRPQVQMENPTSSNQQMQFPTPQHPGQSSWMLNQNIPSQSSSLLPRPPPSDAGFQVPNFFFNFLEFIYLFYFIREKLTGDPKLEN 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19368045 19377549 - Bpe009509.2 Bpe02g01672 99821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01672 917 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Bpe02g01672 917 MobiDBLite consensus disorder prediction 840 873 - -
Bpe02g01672 917 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 605 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bpe02g01672 917 Gene3D - 431 653 IPR011042 -
Bpe02g01672 917 SMART rrm1_1 61 143 IPR000504 GO:0003723
Bpe02g01672 917 Pfam Eukaryotic translation initiation factor eIF2A 405 605 IPR013979 -
Bpe02g01672 917 MobiDBLite consensus disorder prediction 840 881 - -
Bpe02g01672 917 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 8 605 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bpe02g01672 917 SUPERFAMILY DPP6 N-terminal domain-like 219 593 - -
Bpe02g01672 917 SUPERFAMILY RNA-binding domain, RBD 59 143 IPR035979 GO:0003676
Bpe02g01672 917 Gene3D - 161 381 IPR015943 GO:0005515
Bpe02g01672 917 Pfam Hinge domain of cleavage stimulation factor subunit 2 661 737 IPR025742 -
Bpe02g01672 917 Gene3D - 659 739 - -
Bpe02g01672 917 CDD RRM_eIF3B 59 142 IPR034363 -
Bpe02g01672 917 Gene3D - 59 143 IPR012677 -
Bpe02g01672 917 PANTHER BNACNNG51870D PROTEIN 8 605 - -
Bpe02g01672 917 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01269 Bpe-Chr2:16115050 Bpe02g01672 Bpe-Chr2:19368045 0 dispersed
Bpe02g01672 Bpe-Chr2:19368045 Bpe14g00787 Bpe-Chr14:5967434 1.16E-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01672 K03253 - zju:107419937 1112.06