Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01677 ATGAACCCAGCGCGCTATCTTGCTCGACTCGACAAATTCGCTCCTTTTTATTTCCAAACTATTCTACCCATCTCCTCCTCTTCTTCAGCAAATCCTGAATTGGCGGGCAATTCCTTCAAAAATGCGAAAAAATCCCGAGAGAAATGGACCAAGGCCTTGAAATTTTCTTGGAAGTCAGTTAGTTTTGTTGGCCTAGTGGAAAGGCCGCTTAATGTTCAAAAGATTGACGATCATAAACTTCGGGTTTGGACATTTCTCAGAGTCAGACCCTCCTCTGAACTCACTGGCGAATTTAGGGTTTTACTGAAGATGTGGGACGAGATGGCTGAATCATGTCTTGGGCGTCTGAAACCATATGACTTAATCTCTGTAGAAGGTCCTTTGCAATCTTATAAAATGACTGATATGAACGGGGGCTCTAAGTTACACTACCAGATTACAGCCAACAAGTTGAATCACGTAGATCAACATGGTCCAGAATCAAGAAACCAAAGTAGTAAAGATACACAATCTGAAGACGTCAGAACCAGGTCGGAGGGACAGAAAGATCGCCTGCACTTGTGGCAAGTGTTCTTCAGCAGCCCTAATGAATGGTATGATGGGAGAAAAACAAAGTTTAATCCAAGGCAGCCGGATTTTACACACAAGGACACCAGGGAAGCTCTGTGGTTGAATCCAGACGATCCTCCCTGGATAATGAAACAACTCCATATACTTGACGACCGCAGGACCAAAGAAAACAGGTTCAAACATGGCAGTTCAGAACCACGTTGTTCCTTATCCGAATGGCTGTAA 795 43.9 MNPARYLARLDKFAPFYFQTILPISSSSSANPELAGNSFKNAKKSREKWTKALKFSWKSVSFVGLVERPLNVQKIDDHKLRVWTFLRVRPSSELTGEFRVLLKMWDEMAESCLGRLKPYDLISVEGPLQSYKMTDMNGGSKLHYQITANKLNHVDQHGPESRNQSSKDTQSEDVRTRSEGQKDRLHLWQVFFSSPNEWYDGRKTKFNPRQPDFTHKDTREALWLNPDDPPWIMKQLHILDDRRTKENRFKHGSSEPRCSLSEWL 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19397480 19399622 + Bpe009513.1 Bpe02g01677 99826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01677 264 MobiDBLite consensus disorder prediction 154 181 - -
Bpe02g01677 264 PANTHER PROTEIN OSB1, MITOCHONDRIAL 14 257 - -
Bpe02g01677 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN 14 257 IPR011344 GO:0003697|GO:0006260
Bpe02g01677 264 MobiDBLite consensus disorder prediction 155 181 - -
Bpe02g01677 264 ProSiteProfiles Single-strand binding (SSB) domain profile. 55 155 IPR000424 GO:0003697
Bpe02g01677 264 SUPERFAMILY Nucleic acid-binding proteins 59 171 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01677 - - - cmax:111496022 201.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01677 Bpe-Chr2:19397480 Bpe10g00394 Bpe-Chr10:11482634 6.35E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g827 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0169 . . . . . Blo18g00830 . . Bpe02g01677 . Bma01g00777 . . . . . . . . . . . . . . . . . . . . . . . . . Csa02g02002 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012845 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01677 Bpe_Chr02 FPKM 36.884892 35.908871 40.497513 40.69038 26.866018 20.686192 30.485811 47.630039 47.687115 60.977737