Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01693 ATGGATGTTGGTGAGTTCAACAAAGAAACAAGAGTACCAGGTGGGTCTTCATCTTCCACATTTTCCCACCTCATCGGAGAATCTTCCGCCGGAGTTGACAGAAGACGATCATCTGAAGCTATACACAATGGCGTTAATTTTCCTCATCTTCTTCGTCAAGAATCGCTTGGCCAACAAAGAGATGTTGTTCCCGATCGAGTGGCTTCACCGGAAGAGAATTTCGGTTCGTTTACCGGTAGATCTAAACCGAGGAACTCACCGGCGGGAATTACTAGATACCGGGAATGTCTAAAAAACCATGCCGCGAATATTGGTGGGAACATTTACGACGGCTGCGGAGAGTTCATGCCGAACGGCGAAGACGGAACCCTAGAAGCCTTGAAATGCGCCGCCTGCGACTGCCACCGTAATTTCCACCGAAAAGAAGTGGATGGCGAAACTCAATTGATCAGTCCGACCTCGAGAAGAACCATTGTCCTCAATCATCTCCAGCTTCCACCGCCATTGCCGTCTCCCCACCACCATAAATTCTCTATGGGCCTGAATTTCCACTCAAGCCCTACCGCTCCGATCGTGGCGCCCATGAACGTTGCATTCGGCGGAAACGAATCCTCCAGCGAAGATTTAAACGTCTTCCATTCCAACGCCGAAGGGGTTCCACACCCACCATTTTCACTATCGAAGAAGAGGTTCAGAACCAAGTTCACTCAGGAACAGAAGAACAGAATGCTGGAATTCGCAGAGAAAGTGGGGTGGAGAATGCAAAAGCAAAACGAAGAAGAAGTAGACAAGTTCTGCGCAGAAGTAGGAGTAAAGAGACAAGTTCTAAAGGTATGGATGCACAATAACAAAACGACCACCGTGAAAAAGCAAAGCGAGAATCATGATCAGCCGTTGGAGATCACAGGAGCAGCCGACGAAAGAGATTAG 930 48.49 MDVGEFNKETRVPGGSSSSTFSHLIGESSAGVDRRRSSEAIHNGVNFPHLLRQESLGQQRDVVPDRVASPEENFGSFTGRSKPRNSPAGITRYRECLKNHAANIGGNIYDGCGEFMPNGEDGTLEALKCAACDCHRNFHRKEVDGETQLISPTSRRTIVLNHLQLPPPLPSPHHHKFSMGLNFHSSPTAPIVAPMNVAFGGNESSSEDLNVFHSNAEGVPHPPFSLSKKRFRTKFTQEQKNRMLEFAEKVGWRMQKQNEEEVDKFCAEVGVKRQVLKVWMHNNKTTTVKKQSENHDQPLEITGAADERD 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19485985 19486914 + Bpe009527.1 Bpe02g01693 99842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01693 309 Pfam ZF-HD protein dimerisation region 91 143 IPR006456 -
Bpe02g01693 309 MobiDBLite consensus disorder prediction 1 37 - -
Bpe02g01693 309 Gene3D - 220 289 - -
Bpe02g01693 309 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 93 142 IPR006456 -
Bpe02g01693 309 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 92 143 IPR006456 -
Bpe02g01693 309 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 5 59 291 - -
Bpe02g01693 309 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 228 284 IPR006455 -
Bpe02g01693 309 MobiDBLite consensus disorder prediction 51 87 - -
Bpe02g01693 309 SUPERFAMILY Homeodomain-like 224 287 IPR009057 -
Bpe02g01693 309 MobiDBLite consensus disorder prediction 11 26 - -
Bpe02g01693 309 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 59 291 - -
Bpe02g01693 309 MobiDBLite consensus disorder prediction 288 309 - -
Bpe02g01693 309 MobiDBLite consensus disorder prediction 285 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01693 - - - csv:101216040 369.777
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01693 Bpe-Chr2:19485985 Bpe13g00443 Bpe-Chr13:11967088 9.10E-64 dispersed
Bpe12g00548 Bpe-Chr12:11315665 Bpe02g01693 Bpe-Chr2:19485985 3.04E-20 dispersed
Bpe14g00312 Bpe-Chr14:3106882 Bpe02g01693 Bpe-Chr2:19485985 3.87E-34 dispersed
Bpe07g00043 Bpe-Chr7:377369 Bpe02g01693 Bpe-Chr2:19485985 1.27E-41 transposed
Bpe02g01693 Bpe-Chr2:19485985 Bpe05g00095 Bpe-Chr5:1688161 4.10E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g953 . . . . . . . . Cmo05g00254 Cmo12g00418 . . . . . . . Bhi04g00174 . . . Hepe10g0633 . . Cla08g01483 Cam08g1972 Cec08g1547 Cco08g1684 Clacu08g1662 . Cre08g1446 Cone4ag1915 Cone7ag1827 Cone17ag1347 Cone20ag0136 . . . Cme03g01952 Blo17g00796 Blo18g00811 Bda08g01280 Bda01g01497 Bpe02g01693 . Bma01g00760 Bma05g00124 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01390 Csa02g02058 Chy03g01454 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe06g00095 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.8e-50 195.3
Bpe02g00132 . 50 246 ZF-HD Transcription Factor Family AT5G65410 53.7 1.5e-46 183.3
Bpe02g00132 . 1 242 ZF-HD Transcription Factor Family AT4G24660 53.3 2.8e-59 225.3
Bpe06g00095 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.5 1.5e-55 213.0
Bpe02g01693 . 92 286 ZF-HD Transcription Factor Family AT4G24660 52.3 2.6e-44 175.6
Bpe07g00043 . 1 183 ZF-HD Transcription Factor Family AT1G14440 51.3 3.6e-41 165.6
Bpe13g00443 BCT 137 329 ZF-HD Transcription Factor Family AT2G18350 51.0 1.1e-48 190.3
Bpe11g00081 BCT 24 256 ZF-HD Transcription Factor Family AT5G15210 53.2 3.1e-49 192.2
Bpe14g00177 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 7.0e-49 191.0
Bpe14g00177 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 1.4e-56 216.9
Bpe11g00081 BCT 1 281 ZF-HD Transcription Factor Family AT3G28920 51.4 3.4e-55 212.2
Bpe14g00177 . 24 263 ZF-HD Transcription Factor Family AT5G39760 53.4 9.2e-51 197.6
Bpe11g01458 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 53.5 3.9e-51 198.4
Bpe02g00132 . 1 242 ZF-HD Transcription Factor Family AT4G24660 53.3 2.8e-59 225.3
Bpe06g00095 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.5 1.5e-55 213.0
Bpe02g01693 . 92 286 ZF-HD Transcription Factor Family AT4G24660 52.3 2.6e-44 175.6
Bpe14g00177 . 24 263 ZF-HD Transcription Factor Family AT5G39760 53.4 9.2e-51 197.6
Bpe13g00443 BCT 137 329 ZF-HD Transcription Factor Family AT2G18350 51.0 1.1e-48 190.3
Bpe06g00095 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.8e-50 195.3
Bpe02g00132 . 50 246 ZF-HD Transcription Factor Family AT5G65410 53.7 1.5e-46 183.3
Bpe11g01458 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 53.5 3.9e-51 198.4
Bpe11g00081 BCT 24 256 ZF-HD Transcription Factor Family AT5G15210 53.2 3.1e-49 192.2
Bpe14g00177 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 7.0e-49 191.0
Bpe07g00043 . 1 183 ZF-HD Transcription Factor Family AT1G14440 51.3 3.6e-41 165.6
Bpe14g00177 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 1.4e-56 216.9
Bpe11g00081 BCT 1 281 ZF-HD Transcription Factor Family AT3G28920 51.4 3.4e-55 212.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005524 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20995 PF04770 ZF-HD_dimer 1.80E-29 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01693 Bpe_Chr02 FPKM 13.948669 12.171999 11.420711 9.931108 18.789335 23.91404 18.956718 10.812815 11.515736 9.513948