Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01694 ATGCAAAGAATCGTTGGAGCAATAAGACGTTACAAGGAAACAGTGAAAGCTTCAATTTCACAAAACTCAATAAACAGAATGGAGAAGATATTTTCTACTTTACTTCCACCAATGCAGGTGAAAGGGTTGGAATATATAACGGTAGCAGAGGTGCTAATGAAGAAAGGAGAAGAAAGCAGGGGCCCTTGGATTTGTTGTTATACTCAGGATACAGTCATTGAGGCCGTGAAGAATATGGCTCAAAATAACATAGGGTCACTAGTGGTATTAAAGCCAGGAGGAGAGCATATTGTTGGTATCGTCACAGAAAGAGATTATCTGCAGAAAATACTTGCAAAAGGAAGATCGCCTGCGAGCACAAGAGTTTGGGAAATAATGACTAATAAGAACGAGTTGATAACAATGACATCCGACACAAATATTCTTCAAGCAATGCAGCTTATGACAGAAAATCAAATAAGACATGTTCCAGTGATAGATGGGAAAATTGTTGGCATGATTTCTATTGCTGATGTGGTCAGAGCAGTAGTGGAGCAGCAGAGTGGAGAATTGACGCGATTAAATGACTACATCAAAGGAGAATATTATTAA 591 38.75 MQRIVGAIRRYKETVKASISQNSINRMEKIFSTLLPPMQVKGLEYITVAEVLMKKGEESRGPWICCYTQDTVIEAVKNMAQNNIGSLVVLKPGGEHIVGIVTERDYLQKILAKGRSPASTRVWEIMTNKNELITMTSDTNILQAMQLMTENQIRHVPVIDGKIVGMISIADVVRAVVEQQSGELTRLNDYIKGEYY 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19494219 19495753 - Bpe009528.3 Bpe02g01694 99843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01694 196 Gene3D - 41 195 IPR046342 -
Bpe02g01694 196 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL 1 195 - -
Bpe02g01694 196 CDD CBS_pair_bac_euk 69 174 IPR044725 -
Bpe02g01694 196 Pfam CBS domain 64 111 IPR000644 -
Bpe02g01694 196 Pfam CBS domain 124 177 IPR000644 -
Bpe02g01694 196 SUPERFAMILY CBS-domain pair 61 182 IPR046342 -
Bpe02g01694 196 ProSiteProfiles CBS domain profile. 58 119 IPR000644 -
Bpe02g01694 196 SMART cbs_1 131 177 IPR000644 -
Bpe02g01694 196 SMART cbs_1 62 111 IPR000644 -
Bpe02g01694 196 PANTHER CYSTATHIONINE BETA-SYNTHASE (CBS) FAMILY PROTEIN 1 195 - -
Bpe02g01694 196 ProSiteProfiles CBS domain profile. 126 184 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01694 - - - qsu:111996224 257.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01694 Bpe-Chr2:19494219 Bpe02g01813 Bpe-Chr2:20352599 5.00E-59 dispersed
Bpe02g01694 Bpe-Chr2:19494219 Bpe13g00199 Bpe-Chr13:9968689 1.85E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g958 . . . . . . . . Cmo05g00259 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01694 . Bma01g00759 . . . . . Cma05g00253 Car05g00211 . . . . . . . . . . . . . . . . . Lsi08g01384 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012002 0 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01694 Bpe_Chr02 FPKM 28.622536 26.008142 23.977928 27.089336 41.948692 52.272537 35.403294 25.592817 30.533762 29.053871