Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01709 ATGGTAAGCCATGACTCCCCTCCGAGCCCAGCTTCAAATATGCTTCACCAGTTCATAATCTCAGACTCTCTTTCTTCCCACACCCAATTTGGTCACCCACATTTCCAGGCTTACGGCTCATTTCCTCAGTCACTTGGAGAAAGAATGTCTAGATCTACTGAGTATGTTCAAGCTCCTCCAATGGCGGAGGAGCCTCATATCAGCCACAGTGCTCATCTTATGGACCTTCTCGGAGCAACAAGCGAGGCCAGGCATCGTGTTCAAAGTCTCTCGCTTTCTCTCGGCTCTCAAATGGCGTTAAACTCCAATTTCATCACTCCAAATTACTTCGTCTGCGGAGAAAATGGCAGAGAAATTGGCAATTTAGGAGCTGAACAACAATGTAATGAGAACTACTCTTTCATGGATGGAGGAGCTTTTGCTTCATCTTCAACCTCTATGCATAGACATACAGAGAGTTTTGCTTCAGTTCTCGGCAATTCTCGATACCTTAAACCGGCTCAATCTCTCCTCGAAGAAATCGTCAGCGTTGGTGGCAAAAATGTTGACATAAACGTTGAGTTCTATGGAGGTAGAAGAGGATCTCTTTGTTTATCTGCAGAATTAAGAGCAGAACTATGCAGTAATCCTCCATTTTCAGTAGAAAAACATGAAAACCAGCTCCAAATCGCAAAGCTTATCGCCTTGTTGGAGGAGGTCGAGGGTCGATACGAGAAGTACTGCCATCAAATGGAAGGAGTCGCATCATCGTTTGAAGCCATAGCCGGTTACGGATCAGCCAAGTCGTATACTGCACTTGCACTTCAAGCAATGTCTAGGCACTTCTTCAGCCTTAGAGATGCCATAATTTGTCATATAAATCTCGAGAAAAGAAAACTTCTTTATAGTTTGCCAAGAATTAGTGCTGGTTTTTCGCAGCTTAGCTTGTTCGGTAGAGAAAGCAGGAGCAGCCGCGTGACACTTCAGCAGCTCGGAATGATTCACGGCCAAAGACAAGCATGGAGGCCAATCAGAGGCTTACCGGAGACCTCTGTGACAATACTCCGGTCGTGGCTTTTCGAGCATTTTCTCAATCCGTATGGCTTTAAAATGCGTTACTTTTATGGCAATTCAGCTATGTTTTCTAGTGCTAGATTGATCGTTAGTTTGTTTTTGTGCTTCAGCTATCCAAATGACTCTGAAAAGATAATGTTGGCTTCTCAAACTGGCCTCACCAAGAATCAAGTTTCAAATTGGTTTATAAATGCTCGGGTTCGGTTGTGGAAGCCGATGATCGAGGAGATGTACAAAGAAGAATTTGGAGAATCTTCAGAGGACTCTAATCCACTAGCCGGTGGCTCAATTACAGGAGAAGGAGCTATTACAGACTGTGCAGAGGATTAA 1383 44.25 MVSHDSPPSPASNMLHQFIISDSLSSHTQFGHPHFQAYGSFPQSLGERMSRSTEYVQAPPMAEEPHISHSAHLMDLLGATSEARHRVQSLSLSLGSQMALNSNFITPNYFVCGENGREIGNLGAEQQCNENYSFMDGGAFASSSTSMHRHTESFASVLGNSRYLKPAQSLLEEIVSVGGKNVDINVEFYGGRRGSLCLSAELRAELCSNPPFSVEKHENQLQIAKLIALLEEVEGRYEKYCHQMEGVASSFEAIAGYGSAKSYTALALQAMSRHFFSLRDAIICHINLEKRKLLYSLPRISAGFSQLSLFGRESRSSRVTLQQLGMIHGQRQAWRPIRGLPETSVTILRSWLFEHFLNPYGFKMRYFYGNSAMFSSARLIVSLFLCFSYPNDSEKIMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPLAGGSITGEGAITDCAED 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19581890 19583438 - Bpe009541.1 Bpe02g01709 99858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01709 460 Pfam Associated with HOX 157 282 IPR006563 -
Bpe02g01709 460 SMART prehox3 152 284 IPR006563 -
Bpe02g01709 460 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 2 360 - -
Bpe02g01709 460 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 388 441 - -
Bpe02g01709 460 SUPERFAMILY Homeodomain-like 381 430 IPR009057 -
Bpe02g01709 460 ProSiteProfiles 'Homeobox' domain profile. 384 423 IPR001356 GO:0003677
Bpe02g01709 460 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 360 - -
Bpe02g01709 460 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 388 441 - -
Bpe02g01709 460 MobiDBLite consensus disorder prediction 436 460 - -
Bpe02g01709 460 Pfam Homeobox KN domain 389 419 IPR008422 GO:0003677|GO:0006355
Bpe02g01709 460 CDD homeodomain 384 424 IPR001356 GO:0003677
Bpe02g01709 460 SMART HOX_1 376 427 IPR001356 GO:0003677
Bpe02g01709 460 Gene3D - 338 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01709 Bpe-Chr2:19581890 Bpe04g00620 Bpe-Chr4:3964303 3.42E-61 dispersed
Bpe02g00372 Bpe-Chr2:2450902 Bpe02g01709 Bpe-Chr2:19581890 1.05E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20997 PF07526 POX 2.50E-36 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01709 - - vvi:100252354 512.686