Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01711 ATGTACAGAGATCCGTGCAGGGGTACTGTACAAGAACGCCAAGTTGCGCAATTTCTATGGCCGTCCGCGTTTGTAGGCGCTCTGTCCAAAGCAAAGCCCTCCCGGATAGATCAAGACAAAGCTTCTTCGCGGAAAACTATGACCCATTTTTTCTCCAGCTTTCTACTTCTGATTCTCCTTCTCCTCTTGCATGATCCTTGTCTTTCTTCGACTCCAGTCATCTCCGAGCTCTTCGAAAACTGGTGTAGACACCATGGAAAAGGGTATGCTACAGAAGCAGAGAAACTCCACAGGCTCAAAGTGTTCGAAGATAACTATGCCTTCGTTAACAATCATAACCTTGGAAATTCTACCTACTCCCTCTCTCTCAACGCGTTCGCCGATCTTACCCACCACGAGTTCAAGGCTTTTCGTTTGGGTCTTTCTGCTACTGGGTTCGATTCTCAGCATGTGCTACCAACTTCTCGTGAATCCAATCTGACTGTTGAAGTTCCTGCTTCGATTGATTGGAGAAAAGAAGGGGCAGTGACCCGTGTGAAGGATCAAGGAAGTTGCGGTGGGTGTTGGTCGTTTTCAGCGACCGGAGCTATTGAAGGAATCAATGAGATCGTCACCGGATCTCTTATTAGCCTTTCGGAACAAGAGTTGATTGATTGCGACCGATCCTATAACAGCGGATGCAACGGTGGACTTATGGATTATGCGTTTAAATTTGTCATCGATAACAAAGGAATTGACACCGAAGAAGATTACCCCTTTCAAGCCCAGGACAAGTCCTGCAATAAAGGAAAGCTGAATAGGCATGTTGTTACAATTGATGGTTATACCAATGTGCCTTCAAACAACGAGAACGAGTTGCTCAAAGCCGTTGCGACCCAGCCTGGGATTTTCAACGGTCCATGTTCAACTTCCTTGGATCATGCGGTGTTGATAGTAGGGTACGGGACAAAAAATGGAGCGGACTATTGGATTGTGAAGAACTCGTGGGGTCCTCACTGGGGGATGGACGGCTATATTGACATGGAAAGAAACAGTGGGAATTCACATGGAGTTTGCGGTATAAACATGTTGGCTTCATATCCAACAAAGACGAGTCCAAATCCTCCTCCCCCGCCTTCTCCGGGTCCTACGAAATGTGATCTTCTTACTCACTGCCGAGAAGGAGAGACATGTTGTTGTTCGAAGCGATTTCTCGGGATTTGCCTTAAGTGGAAATGCTGTGGGTTGGATTCTGCTATTTGCTGTGAAGACAACCTCTATTGCTGTCCTCATGATTACCCCATTTGTGATATTAAGAGGAACTTATGCCTCAAGCAATCAAACAGTACAGAAATTGAAACAATTCAGAGGAGGGGTTATCCTGGAAAATCTAGCAGTTGGAACAGCTTCATTGAAGCCTGGATTTTAATTCCAATGGCGGAAGAGGGACAGGTGATTGCTTGCCATTCTGTTGAATCCTGGAAGGAGCAGCTCGAGAAAGGAAAGGAAGGCAATAAACTGATTGTGGTGGATTTCACTGCTACCTGGTGCGGTCCATGCCGTGCAATCGCCCCAATTTTTGCAGAGATGGCTAAGAAGATAACAAATGTCCTATTCTTGAAAGTGGACGTGGATGAATTGAGGACTGTTGCTCAGGAGTGGAATGTGGAGGCAATGCCAACCTTCATTTTTCTGAAGGATGGGAAATTGGTTGACAAAATGGTGGGTGCAAATAAGGATGGGCTTCACCAGATGATACAAAAGCTTGCTTGA 1752 45.95 MYRDPCRGTVQERQVAQFLWPSAFVGALSKAKPSRIDQDKASSRKTMTHFFSSFLLLILLLLLHDPCLSSTPVISELFENWCRHHGKGYATEAEKLHRLKVFEDNYAFVNNHNLGNSTYSLSLNAFADLTHHEFKAFRLGLSATGFDSQHVLPTSRESNLTVEVPASIDWRKEGAVTRVKDQGSCGGCWSFSATGAIEGINEIVTGSLISLSEQELIDCDRSYNSGCNGGLMDYAFKFVIDNKGIDTEEDYPFQAQDKSCNKGKLNRHVVTIDGYTNVPSNNENELLKAVATQPGIFNGPCSTSLDHAVLIVGYGTKNGADYWIVKNSWGPHWGMDGYIDMERNSGNSHGVCGINMLASYPTKTSPNPPPPPSPGPTKCDLLTHCREGETCCCSKRFLGICLKWKCCGLDSAICCEDNLYCCPHDYPICDIKRNLCLKQSNSTEIETIQRRGYPGKSSSWNSFIEAWILIPMAEEGQVIACHSVESWKEQLEKGKEGNKLIVVDFTATWCGPCRAIAPIFAEMAKKITNVLFLKVDVDELRTVAQEWNVEAMPTFIFLKDGKLVDKMVGANKDGLHQMIQKLA 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19597096 19605053 - Bpe009543.1 Bpe02g01711 99860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01711 583 SUPERFAMILY Cysteine proteinases 75 362 IPR038765 -
Bpe02g01711 583 SMART Inhibitor_I29_2 78 134 IPR013201 -
Bpe02g01711 583 ProSiteProfiles Thioredoxin domain profile. 458 583 IPR013766 -
Bpe02g01711 583 CDD TRX_family 489 580 - -
Bpe02g01711 583 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 322 341 IPR025661 -
Bpe02g01711 583 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 295 397 - -
Bpe02g01711 583 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 63 294 - -
Bpe02g01711 583 SMART GRAN_2 379 436 IPR000118 -
Bpe02g01711 583 Gene3D Glutaredoxin 471 583 - -
Bpe02g01711 583 SUPERFAMILY Thioredoxin-like 473 582 IPR036249 -
Bpe02g01711 583 PRINTS Papain cysteine protease (C1) family signature 322 328 IPR000668 GO:0006508|GO:0008234
Bpe02g01711 583 PRINTS Papain cysteine protease (C1) family signature 182 197 IPR000668 GO:0006508|GO:0008234
Bpe02g01711 583 PRINTS Papain cysteine protease (C1) family signature 307 317 IPR000668 GO:0006508|GO:0008234
Bpe02g01711 583 SMART pept_c1 164 362 IPR000668 GO:0006508|GO:0008234
Bpe02g01711 583 Pfam Granulin 390 437 IPR000118 -
Bpe02g01711 583 Pfam Cathepsin propeptide inhibitor domain (I29) 78 134 IPR013201 -
Bpe02g01711 583 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 182 193 IPR000169 -
Bpe02g01711 583 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 305 315 IPR025660 -
Bpe02g01711 583 Pfam Papain family cysteine protease 164 361 IPR000668 GO:0006508|GO:0008234
Bpe02g01711 583 PANTHER OS05G0508300 PROTEIN 295 397 - -
Bpe02g01711 583 PANTHER OS05G0508300 PROTEIN 63 294 - -
Bpe02g01711 583 SUPERFAMILY Granulin repeat 376 409 - -
Bpe02g01711 583 Pfam Thioredoxin 480 581 IPR013766 -
Bpe02g01711 583 Gene3D Granulin 377 448 IPR037277 -
Bpe02g01711 583 Gene3D Cysteine proteinases 63 364 - -
Bpe02g01711 583 CDD Peptidase_C1A 165 360 IPR039417 -
Bpe02g01711 583 ProSitePatterns Thioredoxin family active site. 502 520 IPR017937 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01711 - - - jre:108991338 584.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01711 Bpe-Chr2:19597096 Bpe15g00130 Bpe-Chr15:11233300 6.83E-128 dispersed
Bpe08g00520 Bpe-Chr8:3484361 Bpe02g01711 Bpe-Chr2:19597096 9.85E-11 dispersed
Bpe12g00651 Bpe-Chr12:12166910 Bpe02g01711 Bpe-Chr2:19597096 1.88E-26 dispersed
Bpe02g01337 Bpe-Chr2:16979720 Bpe02g01711 Bpe-Chr2:19597096 1.22E-16 transposed
Bpe03g00834 Bpe-Chr3:28238862 Bpe02g01711 Bpe-Chr2:19597096 2.02E-11 transposed
Bpe04g00019 Bpe-Chr4:199867 Bpe02g01711 Bpe-Chr2:19597096 3.21E-15 transposed
Bpe04g00357 Bpe-Chr4:2255669 Bpe02g01711 Bpe-Chr2:19597096 1.52E-18 transposed
Bpe04g00673 Bpe-Chr4:4270512 Bpe02g01711 Bpe-Chr2:19597096 7.01E-12 transposed
Bpe05g00104 Bpe-Chr5:1969986 Bpe02g01711 Bpe-Chr2:19597096 1.03E-66 transposed
Bpe05g00161 Bpe-Chr5:4736536 Bpe02g01711 Bpe-Chr2:19597096 2.20E-10 transposed
Bpe09g00215 Bpe-Chr9:1528327 Bpe02g01711 Bpe-Chr2:19597096 3.02E-12 transposed
Bpe09g00474 Bpe-Chr9:13081959 Bpe02g01711 Bpe-Chr2:19597096 1.09E-32 transposed
Bpe11g01129 Bpe-Chr11:8426319 Bpe02g01711 Bpe-Chr2:19597096 7.51E-22 transposed
Bpe15g01390 Bpe-Chr15:21816798 Bpe02g01711 Bpe-Chr2:19597096 2.51E-08 transposed
Bpe02g01711 Bpe-Chr2:19597096 Bpe06g00034 Bpe-Chr6:397562 5.42E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1017 . . . . . . . . Cmo05g00278 . Cma01g01935 Cma09g00130 Car01g01512 . . Cpe06g00089 . Bhi04g00210 . . . Hepe10g0603 . . Cla08g01455 Cam08g1940 Cec08g1514 Cco08g1653 Clacu08g1630 . Cre08g1416 Cone4ag1941 . . Cone20ag0114 Lsi04g01706 Csa03g04245 . Cme03g01918 . . . Bda01g01515 Bpe02g01711 . Bma01g00744 . . Cmo01g01998 Cmo09g00127 . Cma05g00273 Car05g00226 Car09g00116 Cpe11g00226 Cpe02g00101 . . . . . . . Cla05g01907 Cam05g2044 Cec05g2053 Cco05g2107 Clacu05g2036 Cmu05g1915 Cre05g2037 Lsi08g01361 Csa02g02094 Chy03g01421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011861 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01711 Bpe_Chr02 FPKM 6.913437 6.241333 4.280396 4.486695 21.157358 22.153811 20.144602 3.771163 4.07207 4.673077