Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01721 ATGCCTTCTACGTTCAGCGGCGATGAGACGGCACCATTTTTTGGCTTCCTTGGAGCGGCCGCTGCGCTCATCTTCTCCTGTATGGGGGCTGCTTATGGAACGGCGAAAAGCGGTGTAGGGGTAGCATCGATGGGAGTGATGAGGCCTGAGCTGGTGATGAAATCGATTGTGCCCGTTGTTATGGCCGGAGTTTTGGGTATTTACGGTTTGATTATTGCTGTAATTATTAGCACTGGGATCAACCCCAAGGCCAAATCCTATTACCTTTTTGATGGCTACGCCCATTTGTCCTCTGGTCTTGCTTGTGGCCTCGCTGGTCTCTCTGCTGGCATGGCTATTGGAATCGTCGGTGATGCCGGTGTTAGAGCGAATGCACAGCAGCCAAAGCTCTTTGTTGGGATGATTCTCATTCTTATCTTTGCTGAAGCACTTGCCCTGTATGGTCTCATTGTTGGCATCATTCTTTCTTCGCGAGCAGGTCAGTCCAGAGCCGAATAA 498 50.6 MPSTFSGDETAPFFGFLGAAAALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19682385 19683726 - Bpe009552.1 Bpe02g01721 99870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01721 165 Gene3D - 11 162 IPR035921 -
Bpe02g01721 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Bpe02g01721 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bpe02g01721 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bpe02g01721 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Bpe02g01721 165 SUPERFAMILY F1F0 ATP synthase subunit C 14 77 IPR035921 -
Bpe02g01721 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bpe02g01721 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bpe02g01721 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bpe02g01721 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bpe02g01721 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Bpe02g01721 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Bpe02g01721 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Bpe02g01721 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01721 K02155 ATPeV0C, ATP6L; V-type H+-transporting ATPase 16kDa proteolipid subunit - tcc:18610800 286.189
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01721 Bpe05g00130 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00579 Bpe-Chr2:3744542 Bpe02g01721 Bpe-Chr2:19682385 4.51E-23 dispersed
Bpe02g01721 Bpe-Chr2:19682385 Bpe05g00312 Bpe-Chr5:16688258 2.94E-112 dispersed
Bpe02g00364 Bpe-Chr2:2386718 Bpe02g01721 Bpe-Chr2:19682385 1.90E-08 wgd
Bpe02g01721 Bpe-Chr2:19682385 Bpe05g00130 Bpe-Chr5:2941980 1.01E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1050 . . . . . . . . Cmo05g00293 Cmo12g00375 . . . Car12g00401 . . Cpe07g00380 Bhi04g00233 . . . Hepe10g0130 . . Cla08g01441 Cam08g1922 Cec08g1497 . Clacu08g1612 . Cre08g1398 . . Cone17ag1386 Cone20ag0095 . . . Cme03g01900 Blo17g00753 Blo18g00785 Bda08g01232 Bda01g01524 Bpe02g01721 Bpe05g00130 Bma01g00735 Bma05g00155 . . . Cma12g00425 Cma05g00287 Car05g00237 . Cpe11g00238 . . . . . . . . . . . . . . . Lsi08g01343 Csa02g02112 Chy03g01404 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe05g00018 . 1 732 Primary Pumps ATPases(2) AT1G10130 77.5 0.0e+00 1151.7
Bpe08g00136 CCT 1 792 Primary Pumps ATPases(2) AT2G28520 76.9 0.0e+00 1247.6
Bpe01g00166 CCT 1 814 Primary Pumps ATPases(2) AT2G28520 74.5 0.0e+00 1225.3
Bpe12g00089 CCT,ECH 10 787 Primary Pumps ATPases(2) AT2G28520 61.4 1.4e-281 965.7
Bpe15g00852 CCT,ECH 815 1578 Primary Pumps ATPases(2) AT2G28520 58.9 5.4e-262 900.6
Bpe05g00122 . 1 770 Primary Pumps ATPases(2) AT2G28520 53.5 4.7e-242 834.3
Bpe12g00089 CCT,ECH 6 792 Primary Pumps ATPases(2) AT2G21410 74.3 0.0e+00 1200.3
Bpe15g00852 CCT,ECH 815 1582 Primary Pumps ATPases(2) AT2G21410 71.5 0.0e+00 1112.8
Bpe05g00122 . 1 774 Primary Pumps ATPases(2) AT2G21410 61.7 3.2e-283 971.1
Bpe08g00136 CCT 9 797 Primary Pumps ATPases(2) AT2G21410 59.4 5.2e-281 963.8
Bpe01g00166 CCT 9 818 Primary Pumps ATPases(2) AT2G21410 59.0 7.5e-280 959.9
Bpe12g00089 CCT,ECH 8 792 Primary Pumps ATPases(2) AT4G39080 75.2 0.0e+00 1201.4
Bpe15g00852 CCT,ECH 815 1582 Primary Pumps ATPases(2) AT4G39080 72.1 0.0e+00 1121.3
Bpe05g00122 . 1 774 Primary Pumps ATPases(2) AT4G39080 62.7 7.5e-288 986.5
Bpe08g00136 CCT 9 797 Primary Pumps ATPases(2) AT4G39080 59.8 3.1e-278 954.5
Bpe01g00166 CCT 9 818 Primary Pumps ATPases(2) AT4G39080 59.5 7.0e-278 953.4
Bpe05g00312 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.4e-61 230.3
Bpe07g00494 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.4e-61 230.3
Bpe02g01721 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.4e-61 230.3
Bpe05g00130 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.2e-60 229.2
Bpe07g00494 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.8 6.5e-68 253.8
Bpe05g00312 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 5.5e-67 250.8
Bpe05g00130 BCT 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.2e-66 249.6
Bpe02g01721 BCT 3 165 Primary Pumps ATPases(2) AT1G75630 80.7 2.1e-66 248.8
Bpe05g00312 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 1.7e-74 275.4
Bpe02g01721 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 2.2e-74 275.0
Bpe05g00130 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 3.8e-74 274.2
Bpe07g00494 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 1.1e-73 272.7
Bpe05g00312 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.0e-52 202.6
Bpe05g00130 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.3e-52 201.4
Bpe02g01721 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.3e-52 201.4
Bpe07g00494 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.8e-52 199.9
Bpe04g00047 BCT 1 180 Primary Pumps ATPases(2) AT2G25610 86.7 4.6e-70 261.2
Bpe02g00579 BCT 1 180 Primary Pumps ATPases(2) AT2G25610 87.2 1.7e-69 259.2
Bpe05g00312 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.5e-60 228.8
Bpe07g00494 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.5e-60 228.8
Bpe02g01721 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.5e-60 228.8
Bpe05g00130 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.4e-60 227.6
Bpe04g00047 BCT 1 180 Primary Pumps ATPases(2) AT4G32530 69.0 5.7e-67 250.8
Bpe02g00579 BCT 1 180 Primary Pumps ATPases(2) AT4G32530 69.5 1.7e-66 249.2
Bpe08g00127 CCT,ECH 1 1066 Primary Pumps ATPases(2) AT1G07810 81.3 0.0e+00 1691.0
Bpe01g00156 CCT,ECH 822 1539 Primary Pumps ATPases(2) AT1G07810 78.9 0.0e+00 1097.0
Bpe08g00127 CCT,ECH 1 1066 Primary Pumps ATPases(2) AT1G07670 80.7 0.0e+00 1686.8
Bpe01g00156 CCT,ECH 822 1539 Primary Pumps ATPases(2) AT1G07670 78.2 0.0e+00 1094.3
Bpe05g00018 . 1 732 Primary Pumps ATPases(2) AT1G10130 77.5 0.0e+00 1151.7
Bpe08g00127 CCT,ECH 21 1047 Primary Pumps ATPases(2) AT4G00900 66.3 0.0e+00 1330.1
Bpe01g00156 CCT,ECH 822 1521 Primary Pumps ATPases(2) AT4G00900 65.3 1.9e-256 882.5
Bpe06g00445 . 1 126 Primary Pumps ATPases(2) AT4G02620 81.7 2.4e-55 211.5
Bpe10g00391 . 1 145 Primary Pumps ATPases(2) AT4G02620 66.9 7.4e-49 189.9
Bpe15g00802 CCT,ECH 6 488 Primary Pumps ATPases(2) AT1G76030 95.2 2.5e-267 917.5
Bpe12g00130 CCT,ECH 6 505 Primary Pumps ATPases(2) AT1G76030 92.4 1.1e-265 912.1
Bpe14g01359 . 1 369 Primary Pumps ATPases(2) AT1G12840 78.1 2.1e-168 588.6
Bpe12g00278 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.8 4.4e-117 417.5
Bpe03g00961 . 5 448 Primary Pumps ATPases(2) AT3G42050 78.4 2.9e-201 698.0
Bpe05g00312 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 1.7e-74 275.4
Bpe02g01721 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 2.2e-74 275.0
Bpe05g00130 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 3.8e-74 274.2
Bpe07g00494 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 1.1e-73 272.7
Bpe15g00802 CCT,ECH 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 8.5e-271 929.1
Bpe12g00130 CCT,ECH 1 505 Primary Pumps ATPases(2) AT4G38510 93.1 6.1e-269 922.9
Bpe07g00081 BCT 1 183 Primary Pumps ATPases(2) AT1G64200 75.4 5.6e-69 257.3
Bpe15g00802 CCT,ECH 9 488 Primary Pumps ATPases(2) AT1G20260 95.6 7.4e-267 916.0
Bpe12g00130 CCT,ECH 9 505 Primary Pumps ATPases(2) AT1G20260 92.8 4.0e-265 910.2
Bpe08g00136 CCT 1 792 Primary Pumps ATPases(2) AT2G28520 76.9 0.0e+00 1247.6
Bpe01g00166 CCT 1 814 Primary Pumps ATPases(2) AT2G28520 74.5 0.0e+00 1225.3
Bpe12g00089 CCT,ECH 10 787 Primary Pumps ATPases(2) AT2G28520 61.4 1.4e-281 965.7
Bpe15g00852 CCT,ECH 815 1578 Primary Pumps ATPases(2) AT2G28520 58.9 5.4e-262 900.6
Bpe05g00122 . 1 770 Primary Pumps ATPases(2) AT2G28520 53.5 4.7e-242 834.3
Bpe11g01569 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.5 2.1e-191 664.8
Bpe07g00081 BCT 1 220 Primary Pumps ATPases(2) AT4G11150 78.6 4.1e-90 327.8
Bpe06g00825 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.6 0.0e+00 1173.3
Bpe10g00735 . 1 623 Primary Pumps ATPases(2) AT1G78900 92.5 0.0e+00 1162.5
Bpe15g00802 CCT,ECH 6 488 Primary Pumps ATPases(2) AT1G76030 95.2 2.5e-267 917.5
Bpe12g00130 CCT,ECH 6 505 Primary Pumps ATPases(2) AT1G76030 92.4 1.1e-265 912.1
Bpe15g00802 CCT,ECH 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 8.5e-271 929.1
Bpe12g00130 CCT,ECH 1 505 Primary Pumps ATPases(2) AT4G38510 93.1 6.1e-269 922.9
Bpe15g00802 CCT,ECH 9 488 Primary Pumps ATPases(2) AT1G20260 95.6 7.4e-267 916.0
Bpe12g00130 CCT,ECH 9 505 Primary Pumps ATPases(2) AT1G20260 92.8 4.0e-265 910.2
Bpe14g01359 . 1 369 Primary Pumps ATPases(2) AT1G12840 78.1 2.1e-168 588.6
Bpe12g00278 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.8 4.4e-117 417.5
Bpe07g00081 BCT 1 220 Primary Pumps ATPases(2) AT4G11150 78.6 4.1e-90 327.8
Bpe07g00081 BCT 1 220 Primary Pumps ATPases(2) AT3G08560 69.4 1.1e-79 293.1
Bpe07g00081 BCT 1 183 Primary Pumps ATPases(2) AT1G64200 75.4 5.6e-69 257.3
Bpe06g00445 . 1 126 Primary Pumps ATPases(2) AT4G02620 81.7 2.4e-55 211.5
Bpe10g00391 . 1 145 Primary Pumps ATPases(2) AT4G02620 66.9 7.4e-49 189.9
Bpe03g00961 . 5 448 Primary Pumps ATPases(2) AT3G42050 78.4 2.9e-201 698.0
Bpe08g00136 CCT 1 792 Primary Pumps ATPases(2) AT2G28520 76.9 0.0e+00 1247.6
Bpe01g00166 CCT 1 814 Primary Pumps ATPases(2) AT2G28520 74.5 0.0e+00 1225.3
Bpe12g00089 CCT,ECH 10 787 Primary Pumps ATPases(2) AT2G28520 61.4 1.4e-281 965.7
Bpe15g00852 CCT,ECH 815 1578 Primary Pumps ATPases(2) AT2G28520 58.9 5.4e-262 900.6
Bpe05g00122 . 1 770 Primary Pumps ATPases(2) AT2G28520 53.5 4.7e-242 834.3
Bpe12g00089 CCT,ECH 6 792 Primary Pumps ATPases(2) AT2G21410 74.3 0.0e+00 1200.3
Bpe15g00852 CCT,ECH 815 1582 Primary Pumps ATPases(2) AT2G21410 71.5 0.0e+00 1112.8
Bpe05g00122 . 1 774 Primary Pumps ATPases(2) AT2G21410 61.7 3.2e-283 971.1
Bpe08g00136 CCT 9 797 Primary Pumps ATPases(2) AT2G21410 59.4 5.2e-281 963.8
Bpe01g00166 CCT 9 818 Primary Pumps ATPases(2) AT2G21410 59.0 7.5e-280 959.9
Bpe12g00089 CCT,ECH 8 792 Primary Pumps ATPases(2) AT4G39080 75.2 0.0e+00 1201.4
Bpe15g00852 CCT,ECH 815 1582 Primary Pumps ATPases(2) AT4G39080 72.1 0.0e+00 1121.3
Bpe05g00122 . 1 774 Primary Pumps ATPases(2) AT4G39080 62.7 7.5e-288 986.5
Bpe08g00136 CCT 9 797 Primary Pumps ATPases(2) AT4G39080 59.8 3.1e-278 954.5
Bpe01g00166 CCT 9 818 Primary Pumps ATPases(2) AT4G39080 59.5 7.0e-278 953.4
Bpe05g00312 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.4e-61 230.3
Bpe07g00494 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.4e-61 230.3
Bpe02g01721 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.4e-61 230.3
Bpe05g00130 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.2e-60 229.2
Bpe05g00312 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.0e-52 202.6
Bpe05g00130 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.3e-52 201.4
Bpe02g01721 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.3e-52 201.4
Bpe07g00494 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.8e-52 199.9
Bpe05g00312 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.5e-60 228.8
Bpe07g00494 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.5e-60 228.8
Bpe02g01721 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.5e-60 228.8
Bpe05g00130 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.4e-60 227.6
Bpe07g00494 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.8 6.5e-68 253.8
Bpe05g00312 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 5.5e-67 250.8
Bpe05g00130 BCT 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.2e-66 249.6
Bpe02g01721 BCT 3 165 Primary Pumps ATPases(2) AT1G75630 80.7 2.1e-66 248.8
Bpe05g00312 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 1.7e-74 275.4
Bpe02g01721 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 2.2e-74 275.0
Bpe05g00130 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 3.8e-74 274.2
Bpe07g00494 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 1.1e-73 272.7
Bpe04g00047 BCT 1 180 Primary Pumps ATPases(2) AT4G32530 69.0 5.7e-67 250.8
Bpe02g00579 BCT 1 180 Primary Pumps ATPases(2) AT4G32530 69.5 1.7e-66 249.2
Bpe04g00047 BCT 1 180 Primary Pumps ATPases(2) AT2G25610 86.7 4.6e-70 261.2
Bpe02g00579 BCT 1 180 Primary Pumps ATPases(2) AT2G25610 87.2 1.7e-69 259.2
Bpe11g01569 . 1 351 Primary Pumps ATPases(2) AT3G28710 93.7 1.8e-198 688.3
Bpe11g01569 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.5 2.1e-191 664.8
Bpe08g00127 CCT,ECH 1 1066 Primary Pumps ATPases(2) AT1G07810 81.3 0.0e+00 1691.0
Bpe01g00156 CCT,ECH 822 1539 Primary Pumps ATPases(2) AT1G07810 78.9 0.0e+00 1097.0
Bpe08g00127 CCT,ECH 21 1047 Primary Pumps ATPases(2) AT4G00900 66.3 0.0e+00 1330.1
Bpe01g00156 CCT,ECH 822 1521 Primary Pumps ATPases(2) AT4G00900 65.3 1.9e-256 882.5
Bpe05g00018 . 1 732 Primary Pumps ATPases(2) AT1G10130 77.5 0.0e+00 1151.7
Bpe08g00127 CCT,ECH 1 1066 Primary Pumps ATPases(2) AT1G07670 80.7 0.0e+00 1686.8
Bpe01g00156 CCT,ECH 822 1539 Primary Pumps ATPases(2) AT1G07670 78.2 0.0e+00 1094.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000593 4 3 2 4 4 2 6 2 1 3 2 3 4 3 3 5 3 7 5 3 3 4 3 3 2 3 3 6 3 3 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01721 Bpe_Chr02 FPKM 0.0 0.0 0.15663 0.0 0.0 0.0 0.0 0.0 0.0 0.0