Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01739 ATGGAACCTCTGACTTACGTAGTCGATAAAGTCAAAGACTTTGGGAAAGCAGGCCATATCTTTATTGATGGCATCCTTCATCGCGCCGAAGAGTCCGCTCGTCGCAATCCGATTGAAATCTTGAAACGGTTGCAACGGGAAGCATTCTCAGATTTGATGAAACTTAGGGACAGACAAGATAAAGTTGAGACGGTTATATCTTTGTATAAACCAACTAAAGGAAGTCCATTCAAAGAATTGAGCACCCGTGTAAGGGGAGAAGTTGATCTCCTGGGAGCTCTTTTGATGATCGATAATGTGGACCAACATAGCAGTGATGTGCTTAATAGAGCGGGAATTAGAACCGGAATTAAGTCCAGATTGTCATTTGAAACAGCTGTTGGGGAAAATGATACTCTTGTGACAGAATTTGTGGCTAGTCAACAGGACAATGGACATACTAATGATTTCTCTGGAAGTAACCTTTCTCTAGCTAAAGTTTTTTACAGGGCAAGTATTAGTGATTGGATGTCTGCAGTTGCTGTTCCTCTGGGCGCTCAATGTAGAGATGTTGCTGTAACGACAAGCCTGTCCTATCAGGGCAAAGGTCTTACTGATATTTCTTCTTTGGGACCACCCATTTTGAGTCAACTTAATGGCAGTGCCATTGGTTTATCAATGAGAAAATCAAATGTGCTTGCTTCATTGTCTCAATTTGTTTCCGGCTACGATGAAATTAGACGTTGTTTTGGCACTTTCGGTCAACTTGTCCTTCGATTTCCAAAAGGAACGAGTCTCTCTCTTTTGGGCCTCCTCCAGGTGCCGAAATCATCACCATCGAGTCAACGCACCAATCTTGGACCTCTTGCAGCTCCGATATGCTTCTCAAACCATGTCAATGCACCTGTAGAAGAAGCATCAGCTCCGCCTGTTCTGACCAAAACATGGGAGACTCGTTCTAGCCAACATATTGCTCTAGTTTTAGAGACAGAGCTGGACGAAGTTACAAGACTAGGAGGGTGGGTTGAGATGAACAAATTGAACGACAAACACATACAATGGGCATTGTTGTTATGCGAGGATTCCGAAGAAATGTGTGGATGGGGAATGAGCTTGAGCGGGACGATCGGAAGTAGAGAGGGTCGTTTTCAGGCTGAATCTTATGTAAAGTTGAACTTAGGCCAGAATAGTAGCTTGAAGCCAGGGATAGCGTTCGTAACCGAGGGGAACACGAGATTCACGGCCCTTATGTTGAGGTCTAATTGTAGAAACGCTGCGGACTTTCTGAACATCCAGAGCTTGCTGGAGTTAAGTTGCCAAAGAATAGCAGACATGATCAAGGGCAAAACTCCCGATGAGAACCGCAAAACATTCAAAATTGAGAACGATTTTAGTCCTGAAGAAGAAGAAGAACAAATGCGCAAGGAGTATCAATGGGCCAGCCCTTCCTGTTAA 1434 44.0 MEPLTYVVDKVKDFGKAGHIFIDGILHRAEESARRNPIEILKRLQREAFSDLMKLRDRQDKVETVISLYKPTKGSPFKELSTRVRGEVDLLGALLMIDNVDQHSSDVLNRAGIRTGIKSRLSFETAVGENDTLVTEFVASQQDNGHTNDFSGSNLSLAKVFYRASISDWMSAVAVPLGAQCRDVAVTTSLSYQGKGLTDISSLGPPILSQLNGSAIGLSMRKSNVLASLSQFVSGYDEIRRCFGTFGQLVLRFPKGTSLSLLGLLQVPKSSPSSQRTNLGPLAAPICFSNHVNAPVEEASAPPVLTKTWETRSSQHIALVLETELDEVTRLGGWVEMNKLNDKHIQWALLLCEDSEEMCGWGMSLSGTIGSREGRFQAESYVKLNLGQNSSLKPGIAFVTEGNTRFTALMLRSNCRNAADFLNIQSLLELSCQRIADMIKGKTPDENRKTFKIENDFSPEEEEEQMRKEYQWASPSC 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19796947 19800325 + Bpe009570.1 Bpe02g01739 99888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01739 477 PANTHER GDSL ESTERASE/LIPASE 1 414 - -
Bpe02g01739 477 MobiDBLite consensus disorder prediction 455 469 - -
Bpe02g01739 477 Pfam Skp1 family, dimerisation domain 425 473 IPR016072 GO:0006511
Bpe02g01739 477 Gene3D Potassium Channel Kv1.1; Chain A 397 475 IPR011333 -
Bpe02g01739 477 SUPERFAMILY Skp1 dimerisation domain-like 417 472 IPR036296 GO:0006511
Bpe02g01739 477 PANTHER GDSL ESTERASE/LIPASE 1 414 - -
Bpe02g01739 477 MobiDBLite consensus disorder prediction 455 477 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01739 - - - jre:109010435 471.855
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01739 Bpe05g00151 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01739 Bpe-Chr2:19796947 Bpe15g01337 Bpe-Chr15:21499742 5.58E-07 dispersed
Bpe15g00809 Bpe-Chr15:18264316 Bpe02g01739 Bpe-Chr2:19796947 3.19E-16 wgd
Bpe02g01739 Bpe-Chr2:19796947 Bpe04g00254 Bpe-Chr4:1696325 8.95E-15 wgd
Bpe02g01739 Bpe-Chr2:19796947 Bpe05g00151 Bpe-Chr5:4360817 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1163 . . . . . . . . . . . . . . . . . Bhi04g00111 . . . . . . . . . . . . . . Cone7ag1905 . . . . . . Blo17g00738 Blo18g00770 Bda08g01208 Bda01g01542 Bpe02g01739 Bpe05g00151 . Bma05g00182 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005525 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01739 Bpe_Chr02 FPKM 24.538271 24.940313 22.054588 22.962143 37.394524 34.10384 33.130043 26.605358 29.986021 31.311916