Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01740 ATGGCTGCCACTGCCGATTCTTCGTCCAATCGACACCCTGCCGGTGCGACGGCGGTTCCCGGAGACAGTGGCAACAGCCCACAATTCCTGCGGAGTAATTTTCCTTCTCCGTGGGCCCAAGTCGTTCGAGGAGAGCAAGAATCAATTTCGGCCCTCCGTCACTCGCCGCCTTCGTCTTCATCGTCGCTGTCTTCGCTGGCGACGTCTGTCCAGGAACAAAATTCTTTTTCCGATTGCTTTCCTTCTCAAGCGGCACATTCCTCGCCGCCGCCGCCGCCGCCGCTACCGCAGGGAAATTTTGCGACAGGTGAGACCTCCGATGCGAGTAACGTCAATGCAGCTGCTCAAATCAAGAAGCCTGTTTGGAACAAGCCCTCCAACGGCGCTGTTGAAGTTAGTCCTGTAATGGGGGCGGTCTCTTGGCCGGCATTATCCGACTCTACTAAGTTTTCATCTAAGTTTCAGAGCGAGTCTTCATTGAAGGCCGCTTCTGATGGATCAAACTCTAGTTCACAGGAACCTGCTAATCCGCCTCTTCCTCATAAACATCCAACTACTAATGTAAAACCTAACTCTACATCAAACCACACAATGCCTGTACGACAACGATACAATAGGCGTGGCAATAACAGTAACCATAGCAGCAGCATTGGAGGTGGGCCTCCTCGTGGTGGATTTGTCCGGCCTTCTCAAACTCCGCCACCACCATCTTTTCCTGCGTACCAAGTGCCTCCTAATACTTATGGCAATCTGGTGTCGCCAATGGCAGACACATCTCTTCGAGATTCTTCTTTTCTGAACAGTAATTGGGATGCCAGGCCTGTCGGAGGATTCATATCACAGCAAAATCCAGTCAATGAACCTCGTGGTGGTACGACACGGAGAGGAAACTTCAACCCCAATATGCGTGGAGATGGTATCTACCACCATAGTCGGGCTAGACCAGATGATGAACATGGAAATTATGGTAATGCCAGAGATGTTCATATGCAGCAACAGCAACAGAGACCTCATCCAAGAAGTTTCATGGCCCATCCATCATCTTATACGGCTCCCGCTCCCTTTTTATCTCCTCAACCAGTGAGAGCCTTTGGAAATCCCATGGGTTATCAAGAATTTGTCTATTTCCAGCCAATGCCTTTCGAGCCATTACCTTTGGAGCATTACCGAGGTCCACAGTTCATGCCGCATCTTCCAATTATTCAACCCTACACAGACCCTCATTTGCCCACCTTATTGATCAACCAAATAGACTATTATTTCTGTGATGCTAATTTGGTAAAAGACCCTTTTTTGAGGTCCAATATGGATGATGAAGGATGGGTTTCAATTGATGTAATAGCAAACTTTCCAAGAGTGAAGAAGTTGACCGGGGATTCTCGTTTAATACTAGATTCCATGAAATCTTCAACTGTTGTTGAAGTGCAGGATAATAAGATGAGAAGGCGTGATGACTGGGTCAAGTGGATCCCAAATCAGAATCAGATGGCTACGGAATCACAATCATCAGCTAAATCAAATCAAGACATGATGACGACATTTAAAAATTTAAAAATTGAGGAAGTAGGTAGCAGCCACACTAGCACAAACGGTGAAGGAGACTCAAAAGACGGAGATGCAGCTGGAGAAGTCAGAGAACTACCCAATGGAGAAGTCGCCCAAAATACCAATTTCTCAAAATGA 1683 47.3 MAATADSSSNRHPAGATAVPGDSGNSPQFLRSNFPSPWAQVVRGEQESISALRHSPPSSSSSLSSLATSVQEQNSFSDCFPSQAAHSSPPPPPPLPQGNFATGETSDASNVNAAAQIKKPVWNKPSNGAVEVSPVMGAVSWPALSDSTKFSSKFQSESSLKAASDGSNSSSQEPANPPLPHKHPTTNVKPNSTSNHTMPVRQRYNRRGNNSNHSSSIGGGPPRGGFVRPSQTPPPPSFPAYQVPPNTYGNLVSPMADTSLRDSSFLNSNWDARPVGGFISQQNPVNEPRGGTTRRGNFNPNMRGDGIYHHSRARPDDEHGNYGNARDVHMQQQQQRPHPRSFMAHPSSYTAPAPFLSPQPVRAFGNPMGYQEFVYFQPMPFEPLPLEHYRGPQFMPHLPIIQPYTDPHLPTLLINQIDYYFCDANLVKDPFLRSNMDDEGWVSIDVIANFPRVKKLTGDSRLILDSMKSSTVVEVQDNKMRRRDDWVKWIPNQNQMATESQSSAKSNQDMMTTFKNLKIEEVGSSHTSTNGEGDSKDGDAAGEVRELPNGEVAQNTNFSK 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19801897 19805013 - Bpe009571.1 Bpe02g01740 99889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01740 560 MobiDBLite consensus disorder prediction 145 245 - -
Bpe02g01740 560 MobiDBLite consensus disorder prediction 227 242 - -
Bpe02g01740 560 Pfam La domain 414 468 IPR006630 -
Bpe02g01740 560 MobiDBLite consensus disorder prediction 307 324 - -
Bpe02g01740 560 MobiDBLite consensus disorder prediction 21 35 - -
Bpe02g01740 560 MobiDBLite consensus disorder prediction 276 299 - -
Bpe02g01740 560 MobiDBLite consensus disorder prediction 185 218 - -
Bpe02g01740 560 PANTHER LUPUS LA PROTEIN-RELATED 49 530 IPR045180 -
Bpe02g01740 560 Gene3D - 402 492 IPR036388 -
Bpe02g01740 560 ProSiteProfiles La-type HTH domain profile. 403 492 IPR006630 -
Bpe02g01740 560 SUPERFAMILY Winged helix DNA-binding domain 402 494 IPR036390 -
Bpe02g01740 560 MobiDBLite consensus disorder prediction 1 129 - -
Bpe02g01740 560 MobiDBLite consensus disorder prediction 51 84 - -
Bpe02g01740 560 MobiDBLite consensus disorder prediction 99 113 - -
Bpe02g01740 560 PANTHER LA-RELATED PROTEIN 1B 49 530 - -
Bpe02g01740 560 MobiDBLite consensus disorder prediction 518 560 - -
Bpe02g01740 560 MobiDBLite consensus disorder prediction 276 341 - -
Bpe02g01740 560 CDD LAM 413 483 - -
Bpe02g01740 560 SMART la 407 485 IPR006630 -
Bpe02g01740 560 MobiDBLite consensus disorder prediction 145 176 - -
Bpe02g01740 560 MobiDBLite consensus disorder prediction 326 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01740 K18757 LARP1; la-related protein 1 - tcc:18591599 441.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01740 Bpe05g00153 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01740 Bpe-Chr2:19801897 Bpe12g00064 Bpe-Chr12:463534 1.36E-06 dispersed
Bpe08g00310 Bpe-Chr8:1851236 Bpe02g01740 Bpe-Chr2:19801897 4.23E-25 transposed
Bpe10g00167 Bpe-Chr10:4078070 Bpe02g01740 Bpe-Chr2:19801897 8.43E-51 wgd
Bpe02g01740 Bpe-Chr2:19801897 Bpe05g00153 Bpe-Chr5:4380409 1.72E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01740 Bpe_Chr02 FPKM 0.0 0.0 2.803932 2.568509 0.200973 0.334729 0.0 0.0 0.0 0.0