Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01752 TGTAGGTTTATTTCGTTAAATTCACCTCGTTCAGCCAGCTCAATTCTACTAGCAGCTCCAACTCCTAAAACAATCCAATCGCCCATTCCCTTCCCCTTCATCACCAAGAACAAGTTCTTCACTGCCCCGAACATCATAAACAGAAAGGCTTCCTCATCCCAGTATTACAGACCAATACCATCCCAACTCACTCTAGCTGCCCTTCTCTTTTTCTCCCTCGCGCCGCAAGCTTTTGCTCTAGACAACGCCGCCCCGCCTACCCTCCCGCCGGTTGCCGAAGAAGCACAGGTTAGCATGCCCAGTTCTTTAGATTCTTTCCCATTTTCTCAAAATTTACCGCTCACTGCCCCCAAACCCCAAACTCAAGCCGCTTCTGACCTTCCCGAAGTTGGGCAATGGCGGTACAGCGAATTCTTGAATGCAGTGAAAAAGGGGAAGGTGGAGAGGGTCAGATTCAGCAAGGACGGCTCCGCCCTTCAGCTCACAGCCGTCGATGGCCGCAAGGGCACTGTAATTGTTCCTAATGACCCAGACCTCATTGACATTTTGGCCATGAACGGCGTCGACTTGTCCGTCTCCGAGGGTGAAGCCGGAAATGGGCTCTTCTACTTCATCGGTAATTTGTCGTTCCCTTTTCTTGCGTTTGCTGGATTGTTCTTCCTCTTTCGGAGAGCTCAGGGCGGACCTGGTGGCCCGGGTGGACTCGGCGGGCCAATGGATTTCGGAAGATCAAAATCCAAATTCCAAGAAGTACCGGAGACCGGGGTTACTTTTGCTGATGTCGCTGGAGCAGAAAAAGCTAAATTGGAAGAACTGCAAAAAGTGGTTGACTTCTTAAAGAACCCAGATAAATACACAGCCCTTGGAGCGAAAATTCCAAAAGGTTGCCTTTTGGTCGGACCAACAGGTACCGGAATGCGCTCAGAATTTGTAGAGCTGTTCGTCGGAGTTGGTGCTTCCCGAGTTAGAGACTTGTTCGAGAAGGCCAAGTCTAAAGCACCTTGCATTGTGTTTATTGATGAGATTGATGCAGTGGGGAAGCAGAGAGGGGCTGGTCTCGGAGGTGGAAACGATGAGATAGAACTAACTATTAATCAGCTCTTGACGAAGATGGATGGGTTCGCCGGAAACTTGGGTGTGATTGTGTTGGCTGCGGCTAATAGACCGGATGTTCTTGATGCGGCATTGTTAAGGCTGGGTAGGTTTGATCGACAAGTTACCGTGGACAGGCCTGATGTTGGTGGTAGAGTTAAAATCCTTCAGGTTCGTCTTAAAGTTGAAATGTTTAACATTCTGACAGTTATCTCTATCTTGACCTCATCTTTGGTATTGATTTTTATGCATTTGGATACTGAATTTTACATATTTGGAAAATCAATCTCATCTTTTTTATGGCAGGTGCATTCGAGAGGTAAAACTCTTGCAAAAGATGTCGACTTTGAAAGGATTGCGAGAAGGACCCCGGGTTTCACCGGAGCAGACCTGCAGAATTTGATGAATGAAGCAGCCATGATTGCAGCCAGGTGTGACCTTAAAGAAACCAGCAAAGACGAGATATCCGACGCACTGGAGAGGATAATTGCAGGACCCAAAAAGAAAAATGCAGTTGTGTCGGACAAGAAGAAGTTAGTTGCCTATCATGGTATAAGAAAACCCAGATCTGAATATCCTATCCGGATCTGA 1683 47.47 CRFISLNSPRSASSILLAAPTPKTIQSPIPFPFITKNKFFTAPNIINRKASSSQYYRPIPSQLTLAALLFFSLAPQAFALDNAAPPTLPPVAEEAQVSMPSSLDSFPFSQNLPLTAPKPQTQAASDLPEVGQWRYSEFLNAVKKGKVERVRFSKDGSALQLTAVDGRKGTVIVPNDPDLIDILAMNGVDLSVSEGEAGNGLFYFIGNLSFPFLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGAEKAKLEELQKVVDFLKNPDKYTALGAKIPKGCLLVGPTGTGMRSEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGKQRGAGLGGGNDEIELTINQLLTKMDGFAGNLGVIVLAAANRPDVLDAALLRLGRFDRQVTVDRPDVGGRVKILQVRLKVEMFNILTVISILTSSLVLIFMHLDTEFYIFGKSISSFLWQVHSRGKTLAKDVDFERIARRTPGFTGADLQNLMNEAAMIAARCDLKETSKDEISDALERIIAGPKKKNAVVSDKKKLVAYHGIRKPRSEYPIRI 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19877596 19879546 + Bpe009582.1 Bpe02g01752 99901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01752 560 Pfam ATPase family associated with various cellular activities (AAA) 308 409 IPR003959 GO:0005524|GO:0016887
Bpe02g01752 560 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 465 548 - -
Bpe02g01752 560 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 64 425 - -
Bpe02g01752 560 Gene3D - 242 307 IPR027417 -
Bpe02g01752 560 PANTHER METALLOPROTEASE M41 FTSH 465 548 - -
Bpe02g01752 560 PANTHER METALLOPROTEASE M41 FTSH 64 425 - -
Bpe02g01752 560 SMART AAA_5 292 412 IPR003593 -
Bpe02g01752 560 Pfam AAA+ lid domain 477 518 IPR041569 -
Bpe02g01752 560 Gene3D - 308 410 IPR027417 -
Bpe02g01752 560 Gene3D - 411 426 - -
Bpe02g01752 560 Gene3D - 463 540 - -
Bpe02g01752 560 CDD AAA 287 409 - -
Bpe02g01752 560 Gene3D - 128 198 - -
Bpe02g01752 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 535 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01752 K03798 ftsH, hflB; cell division protease FtsH [EC:3.4.24.-] - zju:112488754 699.123
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01752 Bpe-Chr2:19877596 Bpe12g00257 Bpe-Chr12:2438927 2.41E-100 dispersed
Bpe02g01752 Bpe-Chr2:19877596 Bpe04g00126 Bpe-Chr4:849331 3.92E-59 wgd
Bpe02g01752 Bpe-Chr2:19877596 Bpe05g00179 Bpe-Chr5:6768262 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g123 . . . . . . . . . . Cma01g02003 Cma09g00066 Car01g01573 . . Cpe06g00033 . . . . . . . . . . . . . . . . . Cone17ag1440 Cone20ag0037 Lsi04g01793 Csa04g02687 . . Blo17g00712 . . . Bpe02g01752 . . . . Cmo01g02062 Cmo09g00066 . . . Car09g00058 . Cpe02g00045 Bhi09g02924 . . . . Mch11g0068 . Cla05g01574 . . . . . . . . Chy07g00378 Cme07g00069
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006599 2 1 1 0 2 1 2 1 1 1 2 1 2 1 1 3 1 1 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01752 Bpe_Chr02 FPKM 5.032733 5.336442 22.458012 28.591824 32.782585 33.226952 35.651386 25.886261 28.847134 27.875584