Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01760 ATGCATAGCAAACGCTATGGAAAAGTGAAACTGCCATTGAGTATTGAAGATTACATTCGGAACACTCCTTATGTATCTGATGATGGAGCTGTCACATTGGGTTCAAAGAAGACCAGTTTTTTCCTTCTTGATGCCAAATCCGGAAGATTAATCAATTCTCATACTCTGACTGATTTTCCTTCCACATCAGGGTTAAAGAATGTGGACGAAGATCCAGTTTTGTTGAATGAAGATGCAGAAGAATTTCTAGAGTCTAGCACTGATGACTTAGAAGCAACAACTGAGTCGATGATTTACATCTTTAGAACAGATTATATGGTTCAGCATTATGCCCCAGACTGTGACAAAGTATTATGGAATGTGACCTTCTCTGAATTTGATGCCTCTTTTCGATTGCAGAACCTGAAGAAACCTTTCCTTACTTTTGGAAATTATCCTCCAGCTGAGTACCGTGGTGATATTGGGTTTCAAATTCCTCAGCAGACAAGGCCCATGATTTTCCGGATTCGCAATAATGGCCTAATGGAAACCTTTTCAATTCTCGATACATTTGCAAATGCGTATAAGGAAGGCTGGCCACTTCCTCTACCATCTAATAATCACCAGCAACCCCCTGCCTCGATCGATCAGTTTCCATTATCTTTACAATACAAAGAAGGCAAGAAAATGCTTGCTTTGCCCTCTCCAGAAACAGAAAATTTTGGGGTATTGCCAATTCACCATGGAGAAACTGGTAAATTCAAAAACACTAGCATGGTTGCTGATATTGCAGCTAGGTATAGTATGCAGTCTTTTGTTCCATTTCTTCCTACAATTCTAGCCATTGGGGGCTTCATCTTTTATCAGTATTTTGGACAACTACTGTCTAGGTGGACCGAGCAGACATCAGACCTTAAAACACAAACTGGGATCTCGAAAAAGAAGAAAACTCGGAGGTCTGGAAATAATAAAAATGTTGCTAATAGTGACCAATCGCCAGAAACAATCAGCTCTCGCAAAAATAAAATTGAACATGATAAGGCAAGTCTAAAAAATGATGGAAGTGAAAAGAGATCCCCAATTTCCTTCAGCAGCCTCAGTGACGGCCTTATGGAAGGGCGAAGAATTGGTAGACTAATTGTTTCTAGCAAAGAAATTGCTTTGGGAAGCAATGGAACGGTTGTGCTTGAAGGAATTTATGATGGTCGTCCAGTAGCTGTGAAGCGTCTTGTGCAATCTCATCATGATGTGGCTCTGAAGGAGATTCAAAATCTTATTGCTTCTGATCAGCATCCAAATATAGTTCGATGGTATGGAGTAGAATATGATCAAGACTTTGTATATCTCTCTTTGGAGCGCTGTACTTGTAGTTTGTTCGACCTGATTTCCTCATGTTCTGAAACTTTTCAAAGTCAAACTGTCACCAAGGTCCAGGATTTAGATTCTAATGATTGCTCTCCAATTCAGTCAGTGTTAGAGAATTCTAAGTCTACGGACTTGTGGATGGCAAATGGTTATCCTTCACCTCAGTTGTTGAGGTTGATGAGGGATATTGTTTCTGGGGTTTCCCATTTGCATGAGCTCGGAATTATCCATAGAGACTTGAAGCCTCAAAATGTTTTGATAATCAAGGATAAATCTTTGTGTGGAAAGCTTTCAGATATGGGTATTAGCAAACGGCTTCGTGGGGACAGTTCATCTTTGACTCAGACTGCTACTGGCTATGGCAGTTCCGGTTGGCAAGCACCCGAACAGCTTCTCCAAAAACGACAGAGCCGGGGAGTTGATTTATTTAGTTTAGGCTGTGTTCTCTTTTTTTGCATCACTGGGGGCAAGCACCCATTTGGCGACGGCATTGAACGAGATGTAAATATCATTAATAACCGGATGGACCTTTTCCTGGTGGAGAGCTTACCAGAAGCTGTGGATATTTTGACCCGTCTATTAGATTCTGATCCAGAGATGAGGCCGAGTGCCAAGGAAGTTTTGCATCATCCTTTTTTTTGGAGTTCAGAGCTGAGACTTGCATTTCTCCGTGACGTTAGCGATCGGGTTGAACTGGAAGACAGGGAGGAATCTGAACTGTTAAAAGCACTAGAAAATGTTGGAGTCGTTGCTTTAGATGGAAAGTGGGACGAAAAGATGGAAAATGCTTTTATCAATAACATCTGTAAGTACAGACGATACCGATACGACAGTGTCCGTGACTTACTGCGCGTTATACGTAATAAGTTAAATCACTACCGGGAACTGCCTCAAGAAATCCAGGAGTTGTTAGGGCCAGTTCCTGAAGGATTCGAGAGTTATTTTACAAGCCGGTTTCCTAGGCTGCTTCTCGAAGTCTATCAAGTGATACTCAAATACTGCAGGGAGGAGGAATTTATGATTAAATACAGTAGCTATATAATGTAA 2391 41.15 MHSKRYGKVKLPLSIEDYIRNTPYVSDDGAVTLGSKKTSFFLLDAKSGRLINSHTLTDFPSTSGLKNVDEDPVLLNEDAEEFLESSTDDLEATTESMIYIFRTDYMVQHYAPDCDKVLWNVTFSEFDASFRLQNLKKPFLTFGNYPPAEYRGDIGFQIPQQTRPMIFRIRNNGLMETFSILDTFANAYKEGWPLPLPSNNHQQPPASIDQFPLSLQYKEGKKMLALPSPETENFGVLPIHHGETGKFKNTSMVADIAARYSMQSFVPFLPTILAIGGFIFYQYFGQLLSRWTEQTSDLKTQTGISKKKKTRRSGNNKNVANSDQSPETISSRKNKIEHDKASLKNDGSEKRSPISFSSLSDGLMEGRRIGRLIVSSKEIALGSNGTVVLEGIYDGRPVAVKRLVQSHHDVALKEIQNLIASDQHPNIVRWYGVEYDQDFVYLSLERCTCSLFDLISSCSETFQSQTVTKVQDLDSNDCSPIQSVLENSKSTDLWMANGYPSPQLLRLMRDIVSGVSHLHELGIIHRDLKPQNVLIIKDKSLCGKLSDMGISKRLRGDSSSLTQTATGYGSSGWQAPEQLLQKRQSRGVDLFSLGCVLFFCITGGKHPFGDGIERDVNIINNRMDLFLVESLPEAVDILTRLLDSDPEMRPSAKEVLHHPFFWSSELRLAFLRDVSDRVELEDREESELLKALENVGVVALDGKWDEKMENAFINNICKYRRYRYDSVRDLLRVIRNKLNHYRELPQEIQELLGPVPEGFESYFTSRFPRLLLEVYQVILKYCREEEFMIKYSSYIM 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19925157 19928799 - Bpe009591.1 Bpe02g01760 99909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01760 796 SMART serkin_6 373 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g01760 796 ProSiteProfiles KEN domain profile. 664 794 IPR010513 GO:0004540|GO:0006397
Bpe02g01760 796 Gene3D Phosphorylase Kinase; domain 1 363 445 - -
Bpe02g01760 796 PANTHER IRE1-RELATED 1 793 IPR045133 GO:0004521|GO:0004674|GO:0030968
Bpe02g01760 796 Pfam Protein kinase domain 377 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g01760 796 MobiDBLite consensus disorder prediction 315 329 - -
Bpe02g01760 796 Gene3D KEN domain 665 795 IPR038357 -
Bpe02g01760 796 Gene3D Transferase(Phosphotransferase) domain 1 481 663 - -
Bpe02g01760 796 MobiDBLite consensus disorder prediction 330 347 - -
Bpe02g01760 796 Pfam Ribonuclease 2-5A 667 791 IPR010513 GO:0004540|GO:0006397
Bpe02g01760 796 SMART PGNneu 725 779 - -
Bpe02g01760 796 SUPERFAMILY Protein kinase-like (PK-like) 376 673 IPR011009 -
Bpe02g01760 796 ProSiteProfiles Protein kinase domain profile. 373 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g01760 796 MobiDBLite consensus disorder prediction 298 354 - -
Bpe02g01760 796 PANTHER SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE1B 1 793 - -
Bpe02g01760 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Bpe02g01760 796 CDD RNase_Ire1 665 791 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01760 K08852 ERN1; serine/threonine-protein kinase/endoribonuclease IRE1 [EC:2.7.11.1 3.1.26.-] - jre:109011489 921.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01760 Bpe-Chr2:19925157 Bpe10g00202 Bpe-Chr10:6900823 0 dispersed
Bpe02g01760 Bpe-Chr2:19925157 Bpe01g00737 Bpe-Chr1:6392102 2.10E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g69 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00740 . Bda01g01566 Bpe02g01760 . Bma01g00697 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002039 1 4 2 2 2 2 3 2 2 3 1 2 2 2 2 2 2 3 2 4 2 1 2 3 1 1 1 2 1 3 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63199 PF00069 Pkinase 2.60E-40 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01760 Bpe_Chr02 FPKM 0.173579 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0