Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01767 ATGGCGGATTCGCCGGTGACAGAACCTTTGAATGGTACAAATGCCAATTACCCCCGTCCTTCTCCTTCCTTCAAGCTTGAGATTCCTCCTGTTGATTCTTCACAGCAAACAACTCCCACAACTGTTGCTGCTCCGGCTCGTCCTCCTCTGACATTTGACCCATCTCCCTCCTCCGACGCGGACCTCATTCACATCCCCAGCTACTCAAGATGGTTTTCTTGGAACAACATCCATGACTGCGAACTTCGCTTCCTTCCCGAGTTTTTCGGTTCTCGCTGTTCTTCCAAAAACCCTAAGGTCTACAAGTACCTGAGGAATTCCATTGTCCAACGTTTCAGAGATAACCCGTCGTCCAAAATCACTTTCACCGATGTGCGAAAGACACTTGTCGGAGACGTGGGATCAATTCGAAGGGTTTTTGATTTTCTGGAGGCTTGGGGTTTGATAAATTACTCTCCTTCGACTCTTAACAAGCCCCTCAAGTGGGAGGACAAAGAAACTAAGTCCACTTCCTCCGTTTCACACGGAGAGGCTGGGGCTGTCCCCCCTGATTCTTCTTCCGCTCCTTGCAGAGAAGTGTCAAAAAGAGTTTGCAGTGGCTGCAAATCTAATTGCAGCATTGCCTGTTTTGCTTGTGACAAGTATGACCTGACTCTTTGTGCTCGGTGCTATGTCCGTGGAAACTATCGGGTTGGAGTCACTTCATCAGATTTCCGGCGGGTTGAGATTAGTGAAGACATGAGAACAGATTGGACGGATAAAGAGACTTTGCATCTTCTTGAAGCCGTTATGCATTTTGGAGATGATTGGAAGAAAATTGCTCAACATGTTGGTGGTAGAAGTGAAAAGGAATGTGTGACTCATTTTGTCAAGCTTCCTTTCGGGGAGCAATTCATTAGTTATCCAGAATCAGTGGATAATGATAATAAACATATCTATTTGAAAGACCCTGGAGATGCTAATTTTGGGTCAGTTCATACAAGTACAATCTCTCCAAGTAAAAGAATTCGACTAACACCTCTTGCAGATGCAAGCAACCCCATTATGGCTCAGGCTGCATTTTTGTCTGCACTGGCTGGTGTTGACGTTGCAGAAGCTTCTGCTCGGGCAGCCGTGGCAAACTTGTCGGAGATTGCAGGTAGAACATTCAGATTTATGAAGGAAATGCAAGATAGGCTGGACAGCTTTGAGGAATTAGATTTGCAGTTGGAAAAGGAAAGGCAGCAATTTGAACAAGTGAGAAACATTCTCTTTGCCGATCATCTCAACCTCATATTCAATAAAAGCTCCGATTCCAAAACCACTGAAGACAACCGAAGATTTGATTTGTAA 1332 45.2 MADSPVTEPLNGTNANYPRPSPSFKLEIPPVDSSQQTTPTTVAAPARPPLTFDPSPSSDADLIHIPSYSRWFSWNNIHDCELRFLPEFFGSRCSSKNPKVYKYLRNSIVQRFRDNPSSKITFTDVRKTLVGDVGSIRRVFDFLEAWGLINYSPSTLNKPLKWEDKETKSTSSVSHGEAGAVPPDSSSAPCREVSKRVCSGCKSNCSIACFACDKYDLTLCARCYVRGNYRVGVTSSDFRRVEISEDMRTDWTDKETLHLLEAVMHFGDDWKKIAQHVGGRSEKECVTHFVKLPFGEQFISYPESVDNDNKHIYLKDPGDANFGSVHTSTISPSKRIRLTPLADASNPIMAQAAFLSALAGVDVAEASARAAVANLSEIAGRTFRFMKEMQDRLDSFEELDLQLEKERQQFEQVRNILFADHLNLIFNKSSDSKTTEDNRRFDL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19971999 19974605 - Bpe009598.3 Bpe02g01767 99916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01767 443 ProSiteProfiles SANT domain profile. 246 297 IPR017884 -
Bpe02g01767 443 SMART sant 247 295 IPR001005 -
Bpe02g01767 443 MobiDBLite consensus disorder prediction 28 44 - -
Bpe02g01767 443 Pfam Myb-like DNA-binding domain 249 292 IPR001005 -
Bpe02g01767 443 MobiDBLite consensus disorder prediction 167 190 - -
Bpe02g01767 443 Coils Coil 386 416 - -
Bpe02g01767 443 CDD SANT 251 292 IPR001005 -
Bpe02g01767 443 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3B 386 437 - -
Bpe02g01767 443 SUPERFAMILY Homeodomain-like 248 297 IPR009057 -
Bpe02g01767 443 SUPERFAMILY Homeodomain-like 61 164 IPR009057 -
Bpe02g01767 443 Gene3D - 69 154 IPR036388 -
Bpe02g01767 443 ProSiteProfiles SWIRM domain profile. 63 160 IPR007526 GO:0005515
Bpe02g01767 443 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 248 285 IPR017930 -
Bpe02g01767 443 Pfam SWIRM domain 66 151 IPR007526 GO:0005515
Bpe02g01767 443 PANTHER SWI/SNF COMPLEX-RELATED 386 437 - -
Bpe02g01767 443 PANTHER SWI/SNF COMPLEX-RELATED 20 379 - -
Bpe02g01767 443 MobiDBLite consensus disorder prediction 1 53 - -
Bpe02g01767 443 ProSiteProfiles Myb-like domain profile. 248 293 IPR001005 -
Bpe02g01767 443 Gene3D - 247 296 - -
Bpe02g01767 443 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3B 20 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01767 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101219016 510.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01767 Bpe-Chr2:19971999 Bpe10g00478 Bpe-Chr10:12041357 1.03E-46 dispersed
Bpe02g01767 Bpe-Chr2:19971999 Bpe15g00871 Bpe-Chr15:18666462 5.45E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g45 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1479 . . . . . . Blo18g00731 . Bda01g01574 Bpe02g01767 . Bma01g00692 . . . . . . . Car09g00017 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009874 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 3 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01767 Bpe_Chr02 FPKM 5.294071 4.686028 9.565495 9.65665 8.741961 9.389976 9.244724 9.864167 8.006375 10.294971