Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01775 ATGATGATCGGCGAACGGAACCGTCTCAATCCCACCATTCAGATCCCTGATTGGAACCCCCTTGATGATTCGACGGTGGTGCCTTCTCCGTTTTCCCCCATGAATAGTCCCTCTGCTCTGGACCCTGTTATGGCGCTCCACCGTTTCCTCCCGTCTAATGAGTCTGATTTTCCCAACAAGGAGATGGACGCCTTCTCGTGTGACCATTTCAGAATGTTTGAGTTCAAGGTAAAGATGTGCGCGCGGGGAAGGTCACACGATTGGACGGAATGTCCCTATGCGCATCCTGGAGAGAAGGCTCGCCGGAGAGATCCAGTGAAGTATCGTTACTCCGGCTCCTCGTGCCCTGATTTGCGGAAAGGTATTTGTAAGAAGGGCGATTCCTGCGAGTTCGCCCACGGAGTCTTCGAGTGTTGGCTACATCCGGCTCGGTACCGGACTCAGCCGTGCAAGGACGGAATAGGTTGCCGTCGGCGGGTGTGTTTCTTCGCACACTCCGCGGAACAACTCCGCGTTCTTCCTCAGCAGGGTCCTGTGGTTCGCGGATCTACCGAGTCCTTCGAAGGATCTCCGATTCGTCGGGCGTTTGAAATTAACATGACTAAGGGGTACCCTTGTCTGTCATCGCCAACGTCAATCTTGAATTCCCCGCCGTTATCTCCTTCCGACTCGCCGCCAATGTCTCCCGTCAGCCCTCAAGTCGGCGGCGGATTCGGATCGCCCAAGTCTGTCTATGAACTTCTCACTTCAATGCGTAATCTCCACGTTGGCAATACGAAACCAAGCCGTCAAAGAGAGAAACCATCGGTTAGTTCTCTTCGCAGTTCCACTCTCCGACCTGCTTTCTGTGATTCACCTACGCGAACCCATATTCCGGCTCGCCCCGGAGGGAGTTTCTGTGATTTTTGGGACCAAGCTTTAATGGAAGATCCTGCAATGGAGAGGGTGGAGTCTGGAAGAGACATCCGAGCTCAAATGTATGTCAAACTCAGTCAGGAAAACTCACTCGGCTCGGCCGACCCGGCTCCTGATATTGGGTGGGTCTCCGAGTTAGTCAAGTGA 1062 53.86 MMIGERNRLNPTIQIPDWNPLDDSTVVPSPFSPMNSPSALDPVMALHRFLPSNESDFPNKEMDAFSCDHFRMFEFKVKMCARGRSHDWTECPYAHPGEKARRRDPVKYRYSGSSCPDLRKGICKKGDSCEFAHGVFECWLHPARYRTQPCKDGIGCRRRVCFFAHSAEQLRVLPQQGPVVRGSTESFEGSPIRRAFEINMTKGYPCLSSPTSILNSPPLSPSDSPPMSPVSPQVGGGFGSPKSVYELLTSMRNLHVGNTKPSRQREKPSVSSLRSSTLRPAFCDSPTRTHIPARPGGSFCDFWDQALMEDPAMERVESGRDIRAQMYVKLSQENSLGSADPAPDIGWVSELVK 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20086533 20087594 + Bpe009607.1 Bpe02g01775 99924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01775 353 MobiDBLite consensus disorder prediction 256 290 - -
Bpe02g01775 353 Gene3D - 106 176 - -
Bpe02g01775 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 115 134 IPR000571 GO:0046872
Bpe02g01775 353 SMART c3hfinal6 109 135 IPR000571 GO:0046872
Bpe02g01775 353 SMART c3hfinal6 144 167 IPR000571 GO:0046872
Bpe02g01775 353 PANTHER UNKEMPT FAMILY MEMBER 7 353 IPR045234 -
Bpe02g01775 353 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 353 - -
Bpe02g01775 353 MobiDBLite consensus disorder prediction 256 283 - -
Bpe02g01775 353 ProSiteProfiles Zinc finger C3H1-type profile. 109 136 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00577 Bpe-Chr1:3758965 Bpe02g01775 Bpe-Chr2:20086533 1.17E-88 dispersed
Bpe02g01775 Bpe-Chr2:20086533 Bpe02g02219 Bpe-Chr2:23235449 3.38E-123 dispersed
Bpe02g01775 Bpe-Chr2:20086533 Bpe13g01268 Bpe-Chr13:17880145 4.40E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21002 PF00642 zf-CCCH 2.70E-05 CL0537 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01775 - - vvi:100247549 400.979