Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01796 ATGCAAGGGCAAAGTGGTGGTGTTGGCTCCTTGCCAGAAACATTGAATTTTGACCATGGCTCTTCATCGGGAAATACCGCTGTAGATCAGCAAATTTGCTGGAATAATAGGCGGAATCCTTCAGAAAACCGAATATCTGACTACTTGTTGTTGCAGCAAAGTGATGTAAACTTATCATATGTTAACGCAGTGGGCAGGGAGCAAGAGAGCTTGGCCAGATGGTCCAGAGGTGAACCTAGCTCTAGTGGTGCAGCCATTGAAATGGGTTGTGATGAGCAGAAAGCAGAGCTTGGATGGACGTCAGTAACCCCTTGTGTGGGAGATTGTCCAATGCTAGATGACCTGCGGTGTGGAGCATCCAATAATTTTCCACTGGACAATGTCAGTGTGAATCCACTGTTTATACAAGGTTCCCATTCAAGTGCAATTCCACCAAATCTTAGCTTAAATGCAGGTTACATTAGTCACAATGTCACTGAATGCCCTATTATTTTCAAGGCTAGTGGATTAGAAAATGAGGGAATTCCACCCACAAATGTTTCGGACAATGTCGTCTCTCCTTTTGAAGGTGGTATTTTATCGCTTGAAGGGAGTCATGGCAGACCAGGCTCCTCAATGGAAGGTCGTCGTTTATCTTGCAAAAGAAAGGCATTTGAAGGGTCCTCCGTTGGTGGAAGCACTAGCTATTCGCAGGCTGCTGATAAAACTGTAATTCCCTCTTGCTCTAACGCAAGCACCAATTCCGTTTCGTCCGCTCTGCCTGATCAAGCGAATCAAAGGTTAAGACTTGGTGTAAGAGAAGTAATTCCAGATGGCCTTTCTGATTGTAATGTCGCTGCAACCACTGAAAATGCCCATAGAAATTTCCATATGAGGATTAGTCCCTCAAATCAATCAAGTTCAACTCATCCTAGCATGACATCGTCAGGGAGTGCAAGGCATTCTGGGATCTCATCTTCTCAAGCACCTAACAGGCTTCTTCCTGTCAACTATTCTCCAAATTTAAGGTCAGCACCAGCCACAGATAATGCAACTACTCAAAACCCACCATTTGTTCTTCGTGTTCCTGCTTTGCCTCGAAGTGTGCCAACTTCCAGGGTGAGTGGGGGAAGGGAGAGTTTGCATTCAAGAACTGGTGGTTTATTCGGCTTGGTTGGTGATAGACTTGATCTTCAACGTGAGGATGCCACCTCAAGTAGCACAGCAAGGATTATATTGGAAAATCCTCTGTTTGTACCAGCAACTGAATCAAGAAATCTGACTCGAAATCCACCAAATCGACGTAGACATGGTGGAAACTTGATTATTCCTGGCAATGTCCCTTCTATGTCTAGGACCAGATCCACTATGGCAACTCATCCACCATCTGGCTCTTGGCTTCCTCATGAGAATTCTCTTCCTCCACAATATTCAACACGATTGTCAGAATATGTTCGTAGACAATTGTTTTCTTCAACTTTGGAGTCTGGTGGGGGCCAACCAAATAATCTTCCATCATTAAATTCAGGTCCCTTCTCTCAAGATATGCTTCTCTCTGGAGTTGGTAACCAGGGACATCATTCATCACTCCCCAGAGCCATGCCATGGATCGAGAGACAAGGTGAAGGGCCACTTGGTATTCCATATTCCTTGCGATCGATAGCTGCTCCTGGTGAAGGTAGTGGAGGCCATAGACTCGTATCAGAGCAGATTCGCAACGTCTTAGGCCTTATGCGTCGAGGCGAGAACTTACGAATTGAGGATGTTATGATCCTTGATCAGTCTGTATTATTTGGAGTGGCTGACTTTCACGATCGCCACCGAGACATGCGCCTCGATGTAGATAACATGTCATATGAGGAGTTATTGGCTCTAGAAGAGCAAATTGGAAATGTAAGCACGGGGCTTTCCGAAGACACAATTCTAACTCGCCTTAAACAGAGCAAATGTGCTCCTGTCTTAGGATATCCAATGGAGGAAGAACCTTGCTGTATTTGTCAAGAGGAATATGTCGAGGGAGAGGACATCGGGAAGTTAGATTGTGGGCATGGTTATCACACCGGCTGTATCAAGCAGTGGCTGATGATCAAGAATTTGTGTCCAATTTGTAAAACAACTGCACTGCCAACCTAA 2112 45.12 MQGQSGGVGSLPETLNFDHGSSSGNTAVDQQICWNNRRNPSENRISDYLLLQQSDVNLSYVNAVGREQESLARWSRGEPSSSGAAIEMGCDEQKAELGWTSVTPCVGDCPMLDDLRCGASNNFPLDNVSVNPLFIQGSHSSAIPPNLSLNAGYISHNVTECPIIFKASGLENEGIPPTNVSDNVVSPFEGGILSLEGSHGRPGSSMEGRRLSCKRKAFEGSSVGGSTSYSQAADKTVIPSCSNASTNSVSSALPDQANQRLRLGVREVIPDGLSDCNVAATTENAHRNFHMRISPSNQSSSTHPSMTSSGSARHSGISSSQAPNRLLPVNYSPNLRSAPATDNATTQNPPFVLRVPALPRSVPTSRVSGGRESLHSRTGGLFGLVGDRLDLQREDATSSSTARIILENPLFVPATESRNLTRNPPNRRRHGGNLIIPGNVPSMSRTRSTMATHPPSGSWLPHENSLPPQYSTRLSEYVRRQLFSSTLESGGGQPNNLPSLNSGPFSQDMLLSGVGNQGHHSSLPRAMPWIERQGEGPLGIPYSLRSIAAPGEGSGGHRLVSEQIRNVLGLMRRGENLRIEDVMILDQSVLFGVADFHDRHRDMRLDVDNMSYEELLALEEQIGNVSTGLSEDTILTRLKQSKCAPVLGYPMEEEPCCICQEEYVEGEDIGKLDCGHGYHTGCIKQWLMIKNLCPICKTTALPT 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20219711 20223130 - Bpe009629.1 Bpe02g01796 99945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01796 703 MobiDBLite consensus disorder prediction 416 464 - -
Bpe02g01796 703 Pfam Ring finger domain 656 697 IPR001841 -
Bpe02g01796 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 701 IPR013083 -
Bpe02g01796 703 MobiDBLite consensus disorder prediction 1 25 - -
Bpe02g01796 703 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 701 IPR045191 GO:0061630
Bpe02g01796 703 SMART ring_2 656 696 IPR001841 -
Bpe02g01796 703 MobiDBLite consensus disorder prediction 287 350 - -
Bpe02g01796 703 CDD RING-H2_TTC3 655 697 - -
Bpe02g01796 703 MobiDBLite consensus disorder prediction 439 464 - -
Bpe02g01796 703 ProSiteProfiles Zinc finger RING-type profile. 656 697 IPR001841 -
Bpe02g01796 703 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 701 - -
Bpe02g01796 703 SUPERFAMILY RING/U-box 651 700 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01796 - - - zju:107419992 674.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00797 Bpe-Chr2:5822387 Bpe02g01796 Bpe-Chr2:20219711 1.90E-35 dispersed
Bpe02g01796 Bpe-Chr2:20219711 Bpe14g00549 Bpe-Chr14:4738396 2.91E-30 dispersed
Bpe08g00268 Bpe-Chr8:1565289 Bpe02g01796 Bpe-Chr2:20219711 1.06E-18 dispersed
Bpe03g00847 Bpe-Chr3:28300935 Bpe02g01796 Bpe-Chr2:20219711 2.70E-34 transposed
Bpe05g00370 Bpe-Chr5:17815934 Bpe02g01796 Bpe-Chr2:20219711 3.80E-59 transposed
Bpe13g00364 Bpe-Chr13:11388861 Bpe02g01796 Bpe-Chr2:20219711 8.17E-31 transposed
Bpe12g00707 Bpe-Chr12:12634981 Bpe02g01796 Bpe-Chr2:20219711 2.95E-30 transposed
Bpe02g01796 Bpe-Chr2:20219711 Bpe05g00029 Bpe-Chr5:571815 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g742 . . . . . . . . . Cmo12g00503 . . . Car12g00516 . . Cpe07g00492 Bhi04g00371 Tan02g1796 . . Hepe08g1297 . Lcy13g2093 . . . . . . . . . . . . . . Cme03g02064 Blo17g00874 . . Bda01g01607 Bpe02g01796 . Bma01g00659 . . . . Cma12g00560 . . . . . . . . . . . . . . . . . . . . . Chy03g01557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01796 Bpe_Chr02 FPKM 17.905472 24.684916 27.596237 29.241579 10.587819 9.485047 10.619075 25.176979 23.542353 28.55125