Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01797 ATGGCGCAGATTCAGGTTCAACATCAGACTACGATGACCGGTGCGGCTGCTAATGGCGTGGCCGTAGCTGCTGGAGGGAGTCCAGGGGGATCTTCATTCGTCCCGACGTCGCTTTATGTCGGAGATCTTGACGTAAACGTCACTGACTCGCAGCTTTATGATCTGTTCAATCAAATGGGTCAGGTTCTGTCTGTTCGAGTCTGTAGGGACATGACCACCCGTCGATCTCTCGGTTATGGCTATGTCAACTATAACAATCCTCAAGATGCTGCCCGGGCATTGGAAGAATTAAATTTTACTCCATTAAATGGCGGGCCCATTAGAATTATGTATTCTCACCGTGACCCAAGTGTCCGCAAGAGTGGTGCTGCAAATATATTCATAAAGAATCTGGACAAGGCTATTGACCAGAAAGCATTGCATGATACATTTTCCTCCTTTGGAAGTATTCTTTCTTGCAAGATAGCTACTGATACTTCTGGCCTATCCAAAGGCTATGGTTTTGTTCAATTTGAAAATGAAGAGTCTGCTCAAAATGCAATTGACAAGTTAAATGGCATGCTGATTAATGACAAGCAGGTTTATGTTGGACACTTTCTTCGTAAACAGGAAAGAGAAAGTAGTTCAGATAAGGCAAAATTTAATAACATTTACATAAAGAATTTGTCAGAATCAACTACGGATGAAGATTTGAAGAATATTTTTGGTTCATATGGAGCTATCACCAGTGCTGTGGTGATGAAAGATGGAGATGGAAAGTCAAGATGTTTTGGTTTTGTCAATTTTGAAAGTGCAGATGATGCTGTCAAAGCTGTTGATGAATTGAATGGGAAGACGTTTGATGATAAGGAATGGTATGTTGGAAAAGCTCAGAAAAAATCAGAAAGAGAAGTTGAGCTTAAGGGTCGATTTGAGCAAACCGTGAAGGAAACATATGATAAAAATCAAGGTGTAAACTTGTATGTCAAGAATTTGGACGATAGTATTGATGATGAAAAACTTAGAGAGTTGTTCTTGGAATTCGGTTCAATTACTTCATGCAAGGTTATGTGTGATCCAAATGGAGTAAGTAGAGGTTCTGGATTTGTTGCGTTCACGACTCAAGAGGAAGCATCTCGTGCTCTTGCTGAGATGAATGGTAAAATGATTGTCAGTAAACCTCTCTATGTAGCTCTGGCTCAACGAAAAGAAGAGAGAAGGGCGAGGTTGCAGGCACAATTTTCTCAAATGAGGCCTGTGGCAATGGCACCAGCAGTTGCTCCTCGTTTACCCATATTCCATCCAGGTGCTGTGGGTCTTGGTCAACAGTTTTTATATGGACAAGCTCCTCCTGCTTTAGTTCCTCAAGCAGGATTTGGTTACCAGCAGCAACTTGTTCCAGGGATGAGGCCTGGAGGAGTTCCTATGCCAAACTTCTTTGTTCCCATGGTCCAGCAGGGTCAGATTGGTCAACGGCCAGGAGGTCGGCGAGGATCAGGTCCTCTGCAACAAACTCAGCAACCTGTACCACTGATGCAGCCTCAGATGCTTCCAAGGGGACGAATATATCGTTATCCTCCTGGTCGTAACATGCCTGATGGACCGATGCCTGGTGTTGCTGGAGGTTTGCCTTCGTCTCCTTATGAGTTGGGGGGCATGCCTATGCGAGACCCATCTCTTGGACAATCTGCTCCTGTACCCGCTATGGCTACAGCCCTTGCTAATGCTACTCCAGAGCAGCAAAGGATGATGCTTGGGGAAGCGTTGTATCCCCTGGTGGATCAGTTGGAGCATGAATCAGCTGCTAAGGTAACTGGGATGCTCCTGGAGATGGACCAGACTGAGGTGCTGCACCTGCTTGAGTCGCCAGAGGCTTTGAGGGCAAAAGTTGCAGAGGCCATGGAGGTTCTCAGGAGTGTTGCCCAACAGCAGGGGAACGCTGCAGTTGATCAACTTTCCTCCCTCTCTCTTAGTGATGATCTTGTAGGTTAA 1971 45.31 MAQIQVQHQTTMTGAAANGVAVAAGGSPGGSSFVPTSLYVGDLDVNVTDSQLYDLFNQMGQVLSVRVCRDMTTRRSLGYGYVNYNNPQDAARALEELNFTPLNGGPIRIMYSHRDPSVRKSGAANIFIKNLDKAIDQKALHDTFSSFGSILSCKIATDTSGLSKGYGFVQFENEESAQNAIDKLNGMLINDKQVYVGHFLRKQERESSSDKAKFNNIYIKNLSESTTDEDLKNIFGSYGAITSAVVMKDGDGKSRCFGFVNFESADDAVKAVDELNGKTFDDKEWYVGKAQKKSEREVELKGRFEQTVKETYDKNQGVNLYVKNLDDSIDDEKLRELFLEFGSITSCKVMCDPNGVSRGSGFVAFTTQEEASRALAEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMAPAVAPRLPIFHPGAVGLGQQFLYGQAPPALVPQAGFGYQQQLVPGMRPGGVPMPNFFVPMVQQGQIGQRPGGRRGSGPLQQTQQPVPLMQPQMLPRGRIYRYPPGRNMPDGPMPGVAGGLPSSPYELGGMPMRDPSLGQSAPVPAMATALANATPEQQRMMLGEALYPLVDQLEHESAAKVTGMLLEMDQTEVLHLLESPEALRAKVAEAMEVLRSVAQQQGNAAVDQLSSLSLSDDLVG 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20227109 20232124 - Bpe009630.1 Bpe02g01797 99946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01797 656 CDD RRM3_I_PABPs 214 293 - -
Bpe02g01797 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Bpe02g01797 656 SUPERFAMILY RNA-binding domain, RBD 315 411 IPR035979 GO:0003676
Bpe02g01797 656 PANTHER RNA BINDING PROTEIN 25 640 - -
Bpe02g01797 656 CDD RRM4_I_PABPs 317 395 - -
Bpe02g01797 656 SUPERFAMILY RNA-binding domain, RBD 124 296 IPR035979 GO:0003676
Bpe02g01797 656 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 37 631 IPR006515 GO:0003723
Bpe02g01797 656 Gene3D - 116 204 IPR012677 -
Bpe02g01797 656 PANTHER POLYADENYLATE-BINDING PROTEIN 25 640 - -
Bpe02g01797 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 201 IPR000504 GO:0003723
Bpe02g01797 656 SUPERFAMILY PABC (PABP) domain 499 643 IPR036053 GO:0003723
Bpe02g01797 656 Gene3D - 554 637 - -
Bpe02g01797 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723
Bpe02g01797 656 Pfam Poly-adenylate binding protein, unique domain 566 630 IPR002004 GO:0003723
Bpe02g01797 656 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 558 635 IPR002004 GO:0003723
Bpe02g01797 656 SMART poly_2 570 633 IPR002004 GO:0003723
Bpe02g01797 656 SUPERFAMILY RNA-binding domain, RBD 29 120 IPR035979 GO:0003676
Bpe02g01797 656 SMART rrm1_1 319 391 IPR000504 GO:0003723
Bpe02g01797 656 SMART rrm1_1 37 110 IPR000504 GO:0003723
Bpe02g01797 656 SMART rrm1_1 216 288 IPR000504 GO:0003723
Bpe02g01797 656 SMART rrm1_1 125 197 IPR000504 GO:0003723
Bpe02g01797 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 292 IPR000504 GO:0003723
Bpe02g01797 656 Gene3D - 305 408 IPR012677 -
Bpe02g01797 656 Gene3D - 205 304 IPR012677 -
Bpe02g01797 656 CDD RRM2_I_PABPs 122 198 IPR045305 -
Bpe02g01797 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Bpe02g01797 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Bpe02g01797 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 388 IPR000504 GO:0003723
Bpe02g01797 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 194 IPR000504 GO:0003723
Bpe02g01797 656 CDD RRM1_I_PABPs 37 116 - -
Bpe02g01797 656 Gene3D - 31 115 IPR012677 -
Bpe02g01797 656 SMART rrm2_1 37 110 IPR003954 GO:0003676
Bpe02g01797 656 SMART rrm2_1 125 197 IPR003954 GO:0003676
Bpe02g01797 656 SMART rrm2_1 319 391 IPR003954 GO:0003676
Bpe02g01797 656 SMART rrm2_1 216 288 IPR003954 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00249 Bpe-Chr1:1510039 Bpe02g01797 Bpe-Chr2:20227109 1.41E-09 dispersed
Bpe02g00197 Bpe-Chr2:1375476 Bpe02g01797 Bpe-Chr2:20227109 0 dispersed
Bpe02g01797 Bpe-Chr2:20227109 Bpe15g00903 Bpe-Chr15:18896488 0 dispersed
Bpe02g01797 Bpe-Chr2:20227109 Bpe12g00052 Bpe-Chr12:406231 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01797 K13126 - jre:108990379 995.727