Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01798 ATGAAGGTTCATCAATTTGCATGCGGATTCTGGGACCTCGACATATCCTCCCTCTCCCATGGCTGCAACCGACTCCGTCCTCTCGCTCCCAACCTTCAAAACAACACTGATACCGCCATCTCCACCTTTGATCTCAAGAACTACATCAGACCCCATTCCGGCCGTAGATTAAATCCTTCCTTTTCCTTCTCTTCCGACAACAAGCATCCTGGAGGGACAAGGTGGAACCCAACTCAAGAACAGATAGGGATATTGGAGATGCTTCACAGAGGAGGTATGAGAACTCCTAATGGACAAGAAATAGAACAAATCAAAAAACAGCTTTGTAATTATGGGAAAATAGAAGGAAAAAATGTGTTTTATTGGTTTCAAAACCACAAAGCTCAAGAAAGGCAGAAACAGAAGCGAAACAGTCATGGTGTTTGCCATAGCCCAAGAACATCGGTAGCTGACTCTAGGGTAGGACCTGTAATATTTTTCCATTTTTATGATGTTGAAGTTGCAGAAGAAATGGATTCTAATAGAATTTATGTTCAGATAGAAGTAATAGATCGGAGAGAGGAGGATAGTTCGTTCAAGAGAAAGTGCAGAAGCTAG 597 42.38 MKVHQFACGFWDLDISSLSHGCNRLRPLAPNLQNNTDTAISTFDLKNYIRPHSGRRLNPSFSFSSDNKHPGGTRWNPTQEQIGILEMLHRGGMRTPNGQEIEQIKKQLCNYGKIEGKNVFYWFQNHKAQERQKQKRNSHGVCHSPRTSVADSRVGPVIFFHFYDVEVAEEMDSNRIYVQIEVIDRREEDSSFKRKCRS 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20240886 20241621 - Bpe009631.1 Bpe02g01798 99947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01798 198 MobiDBLite consensus disorder prediction 56 77 - -
Bpe02g01798 198 ProSiteProfiles 'Homeobox' domain profile. 68 133 IPR001356 GO:0003677
Bpe02g01798 198 Gene3D - 73 139 - -
Bpe02g01798 198 SUPERFAMILY Homeodomain-like 68 138 IPR009057 -
Bpe02g01798 198 MobiDBLite consensus disorder prediction 57 77 - -
Bpe02g01798 198 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 198 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Bpe02g01798 198 CDD homeodomain 73 134 IPR001356 GO:0003677
Bpe02g01798 198 Pfam Homeodomain 73 132 IPR001356 GO:0003677
Bpe02g01798 198 SMART HOX_1 70 137 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01798 - - - rcu:8288579 218.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01798 Bpe-Chr2:20240886 Bpe13g00375 Bpe-Chr13:11501936 6.28E-25 dispersed
Bpe15g01254 Bpe-Chr15:21022524 Bpe02g01798 Bpe-Chr2:20240886 1.34E-27 transposed
Bpe02g01798 Bpe-Chr2:20240886 Bpe05g00030 Bpe-Chr5:583855 1.65E-83 wgd
Bpe02g01798 Bpe-Chr2:20240886 Bpe05g00030 Bpe-Chr5:583855 1.65E-83 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe02g00305 . 1 176 Wox Gene Family AT4G35550 59.5 8.7e-52 200.7
Bpe05g00030 . 1 147 Wox Gene Family AT1G46480 65.2 4.9e-49 191.0
Bpe02g01798 . 1 138 Wox Gene Family AT1G46480 59.2 3.4e-42 168.3
Bpe05g00030 . 1 147 Wox Gene Family AT1G46480 65.2 4.9e-49 191.0
Bpe02g01798 . 1 138 Wox Gene Family AT1G46480 59.2 3.4e-42 168.3
Bpe02g00305 . 1 176 Wox Gene Family AT4G35550 59.5 8.7e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21007 PF00046 Homeodomain 3.10E-16 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g01798 Bpe_Chr02 FPKM 9.3807 8.918348 27.160334 26.882576 236.261993 231.662155 239.768372 23.398621 25.306211 22.68856