Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01845 GAAATGTCTTCTTCAAGACCGAGTCAATCATCAAGCAACTCAGGTCGATCAAGACACAGTGCTAGAATAATTGCTCAGACTACTGTAGATGCAAAACTTCATGCAAATTATGAAGAATCCAGTAGTTCTTTTGACTACTCAAGTTCAGTGCGGTTTACCAATGCTTTTGGTGAAGATCAACGACCCAAGTCTGACAAAGTCACAACAGCTTACCTCCATCACATACAAAAAGGCAAGCATATCCAGCCATTTGGCTGCTTGTTGGCTTTAGATGAGAAAACCTTCAAAGTCATTGCATACAGTGAAAATGCCACGGAAATGCTAACTATGGTGAGTCATGCAGTCCCAAGTGTTGGTGATCATCCAGTTCTTGGCATTGGAATTGATTTTAGGACCATTTTCACTGCCCCAAGCGCCTCAGCCTTGCAGAAGGTTCTTGGTTTTGGAGAGGTTACACTTCTGAATCCTGTGTTAGTTCATTGTAAGACATCTGGGAGGCCCTTCTATGCAATCGTTCATCGTGTTACCGGCAGCTTGATCATTGATTTTGAACCTGTGAAGCCTTATGAAATACCAATGACTGCAGCTGGGGCCCTACAATCTTATAGGCTTGCAGCAAAAGCTATTAACAGATTGCAGTCTCTGCCCAGTGGGAGCATGGAAAGACTTTGTGATACAATGGTTCAAGAGGTTTATGAACTCACAGGCTATGACAGAGTGATGGTCTACAAATTTCACGATGATGACCATGGGGAAGTGGTCTCTGAAGTCACAAAGCCTGGGTTGGAGCCATATCTGGGGTTGCACTATCCAGCTACTGATATCCCTCAAGCTGCACGGTTTTTATTCATGAAGAATAAGGTTCGAATTATTGTTGATTGTCGTGCAAAACCTGTGAATGTGCTCCAAGACGAGAAACTTTCCTTTGATCTAACTTTATGTGGTTCAACTTTAAGGGCCCCTCATAGTTGCCATTTGCAGTACATGGAGAACATGAATTCCATCGCTTCTCTGGCTATGGCTGTTGTGGTCAACGAGGAAGATGACGAGAATGACAATCCCAATCCTGTGCTGCCACAAAAGAGAAAGAGATTATGGGGTTTAGTAGTTTGCCATAACACAACCCCCAGGTTTGTACCATTCCCTCTAAGATATGCATGTGAATTTCTCGCTCAAGTATTTGGCATCCATGTCAACAAAGAATTAGAGCTGGAAAATCAGATTGTTGAAAAAAACATTCTACGCACACAAACACTCTTGTGCGACATGTTGATGCGGGACGCACCCTTAGGCATAGTAACACAGAGCCCGAATATAATGGATCTTGTGAAATGTGATGGAGCTGCCATGATGTACAAAAATCAGGTATGGAGATTGGGAATAACTCCAAGTGAAGTCCAGCTCCAAGAAATTGCTTCGTGGCTTTCTGAGCATCATATGGATTCGACTGGATTAAGCACAGATAGTTTGTACGATGCGGGTTTCCCAGGGGCTCTCGCTCTTGGCGATGGAGTCTGTGGAATGGCGACAGTTCGGATAACTTCCAAGGACATGATTTGTTGGTTTCGTACCCATGCTGTCGCGGAAATTCGATGGGGCGGGGCAAAGCATGAAGCTGGTGAAGAGGACGACAGTAGGAAGATGCATCCAAGATCATCTTTCAAAGCTTTTCTTGAAGTAGTTGAAAGGAGAAGTTTTCCCTGGAAGGACTATGAAATGGATGCAATCCATTCCCTGCAGCTTATATTGAGGAATGCACTGAAAGATATGCAAATGGTTGATACGAACAGCAAATCAATTCATGCAAAACTCAGCAACCTCAAGATTGGGGGGATGCAAGAACTAGAAGCAGTTACTGGTGAGATTGTCCGTTTGATTGAGACAGCCATGGTGCCTATTTTGGCTGTTGACGGAGAGGGGCTAGTTAATGGCTGGAATATGAAAATTGCTGAGTTAACTGGTCTTCCTGTTGAGAAAGCGATCGGAAACCATTTTCTCTCTCTTGTGGAGGATTCTTCAGTAGATACAGTCAAGAAGATGTTGTACCTAGCGTTCCAAGGACAAGAGGAGAAACATGTAGAATTTGAGATTAGAACTCACGGGCCTAGGATCGATGCAGGTCCCATTAGCTTAGTTGTGAACGCTTGTGCAAGCAGGGATTTGGAGGAAAATGTTGTTGGAGTGTGTTTTGTGGCTCAAGATATCACTGCTCAGAAGACAGTGATGGACAAGTTCACACGGATAGAAGGTGATTACAAAGCAATTGTGCAGAACCCAAATCCACTAATCCCCCCTATATTTGGCATGGATGAATTTGGCTGGTGCACAGAATGGAACCCAGCAATGACAAAGTTAAGTGGGTGGAAGCGAGATGATGTTGTTGATAAAATACTCTTGGGAGAGGTCTTTGGGACCCAAATGGCCTGCTGTCGAGTCAAGAATCAAGAATTGTGTGTAAATCTTGGTGTAGTCCTTAATAATGCTATGAGTGGCCAAAATCCCGAAAAGATTTCTTTTGGTTTCTATGATCGGAAAGGTAAATACGTAGAATGTCTGTTGTGTGTGAGTAAGAAAACCGACAGAGATGGTACAGTGACTGGAATTTTTTGCTTTTTGCAACTTCCTAGCTTAGAGTTGCAGAAAGCACTCCATGTGCAGCACTTAGCCGAGAAAACTGCCGTAAAGAGATCAAAAGCATTAGCTTATATAAAAAGGCAGATTGGAAGTTCTTTATCTGGCATCATATATTCTAGTGAAATGTTGGAGGGTACTGCATTGGAAGTAGAACAGAAACATCTTCTGCAAACAAGCACACAGTGCCAGCGGCAGCTCAGCAAGGTTCTTGATGACTCAGATCTTGATAGAATCTTTGATGGCTTTTTGGATCTTGAAATGGTTCAGTTTTCTCTACATGAAGTATTGGCTGCTTCGATCAGCCAAGTCATGATGAAGAGCAGAGAAAAGAGTGTTCTCATCCTAAATGAGACTGCTAAAGAGATCCAGAATGAAGCTCTATACGGTGATAATGCGAGGCTTCAGCAAGTGTTGGCTGATTTCTTACTAATATCAGTCAGTTTTTCTCCAGTAGGCAGCCAGATTATTATTTCGGCCAGTCTAACAAAAGATCAATTGGGCCAATCCATAGATCTAGCACATCTGAAGTTCAGAATAACGCAAGGAGGTGGTGGAATACCAGCAGCACTGCTAAATGAATTGTTTGAAAACAATGAAGACAGGTCTGAAGAAGGGGTCAGCTTGCTTGTTAGCAGAAAGCTGGTGAAGCTCATGAATGGAGATGTGCAATATCTGAGAGAAGCGGGCAAGTCTACATTCATCATATCTGTCGAGCTCGCGGCAGGCCACATGCCAATTTAG 3375 43.29 EMSSSRPSQSSSNSGRSRHSARIIAQTTVDAKLHANYEESSSSFDYSSSVRFTNAFGEDQRPKSDKVTTAYLHHIQKGKHIQPFGCLLALDEKTFKVIAYSENATEMLTMVSHAVPSVGDHPVLGIGIDFRTIFTAPSASALQKVLGFGEVTLLNPVLVHCKTSGRPFYAIVHRVTGSLIIDFEPVKPYEIPMTAAGALQSYRLAAKAINRLQSLPSGSMERLCDTMVQEVYELTGYDRVMVYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRIIVDCRAKPVNVLQDEKLSFDLTLCGSTLRAPHSCHLQYMENMNSIASLAMAVVVNEEDDENDNPNPVLPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFGIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSPNIMDLVKCDGAAMMYKNQVWRLGITPSEVQLQEIASWLSEHHMDSTGLSTDSLYDAGFPGALALGDGVCGMATVRITSKDMICWFRTHAVAEIRWGGAKHEAGEEDDSRKMHPRSSFKAFLEVVERRSFPWKDYEMDAIHSLQLILRNALKDMQMVDTNSKSIHAKLSNLKIGGMQELEAVTGEIVRLIETAMVPILAVDGEGLVNGWNMKIAELTGLPVEKAIGNHFLSLVEDSSVDTVKKMLYLAFQGQEEKHVEFEIRTHGPRIDAGPISLVVNACASRDLEENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGMDEFGWCTEWNPAMTKLSGWKRDDVVDKILLGEVFGTQMACCRVKNQELCVNLGVVLNNAMSGQNPEKISFGFYDRKGKYVECLLCVSKKTDRDGTVTGIFCFLQLPSLELQKALHVQHLAEKTAVKRSKALAYIKRQIGSSLSGIIYSSEMLEGTALEVEQKHLLQTSTQCQRQLSKVLDDSDLDRIFDGFLDLEMVQFSLHEVLAASISQVMMKSREKSVLILNETAKEIQNEALYGDNARLQQVLADFLLISVSFSPVGSQIIISASLTKDQLGQSIDLAHLKFRITQGGGGIPAALLNELFENNEDRSEEGVSLLVSRKLVKLMNGDVQYLREAGKSTFIISVELAAGHMPI 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20583218 20587747 + Bpe009676.1 Bpe02g01845 99994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01845 1124 PRINTS Phytochrome signature 713 730 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 733 753 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 550 568 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 432 452 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 517 536 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 621 637 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 640 655 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 187 IPR035965 -
Bpe02g01845 1124 SMART HKATPase_4 1007 1119 IPR003594 -
Bpe02g01845 1124 Coils Coil 399 419 - -
Bpe02g01845 1124 ProSiteProfiles PAS repeat profile. 618 688 IPR000014 -
Bpe02g01845 1124 Pfam GAF domain 219 402 IPR003018 GO:0005515
Bpe02g01845 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 392 IPR016132 -
Bpe02g01845 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 765 871 IPR035965 -
Bpe02g01845 1124 MobiDBLite consensus disorder prediction 1 23 - -
Bpe02g01845 1124 ProSiteProfiles Histidine kinase domain profile. 902 1119 IPR005467 -
Bpe02g01845 1124 SMART gaf_1 219 412 IPR003018 GO:0005515
Bpe02g01845 1124 Gene3D - 200 563 IPR029016 -
Bpe02g01845 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Bpe02g01845 1124 Gene3D PAS domain 75 322 - -
Bpe02g01845 1124 SUPERFAMILY GAF domain-like 410 589 - -
Bpe02g01845 1124 Pfam PAS fold 751 873 IPR013767 GO:0006355
Bpe02g01845 1124 Pfam PAS fold 621 735 IPR013767 GO:0006355
Bpe02g01845 1124 Gene3D - 958 1120 IPR036890 -
Bpe02g01845 1124 CDD PAS 762 873 IPR000014 -
Bpe02g01845 1124 Gene3D PAS domain 764 874 - -
Bpe02g01845 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1007 1117 IPR003594 -
Bpe02g01845 1124 Pfam PAS fold 70 186 IPR013654 GO:0006355
Bpe02g01845 1124 Gene3D PAS domain 614 753 - -
Bpe02g01845 1124 PIRSF Phytochrome_conventional 1 1122 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bpe02g01845 1124 SUPERFAMILY GAF domain-like 198 399 - -
Bpe02g01845 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 952 1113 IPR036890 -
Bpe02g01845 1124 CDD PAS 631 735 IPR000014 -
Bpe02g01845 1124 PANTHER PHYTOCHROME A 2 1120 - -
Bpe02g01845 1124 Pfam Phytochrome region 415 589 IPR013515 GO:0006355|GO:0009584
Bpe02g01845 1124 PANTHER TWO-COMPONENT HISTIDINE KINASE 2 1120 - -
Bpe02g01845 1124 SMART pas_2 620 686 IPR000014 -
Bpe02g01845 1124 SMART pas_2 750 819 IPR000014 -
Bpe02g01845 1124 ProSiteProfiles PAS repeat profile. 751 803 IPR000014 -
Bpe02g01845 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 624 731 IPR035965 -
Bpe02g01845 1124 Gene3D - 407 580 IPR043150 -
Bpe02g01845 1124 TIGRFAM sensory_box: PAS domain S-box protein 625 741 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01845 Bpe-Chr2:20583218 Bpe07g00650 Bpe-Chr7:13229839 0 dispersed
Bpe02g01845 Bpe-Chr2:20583218 Bpe02g00962 Bpe-Chr2:8964442 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01845 K12120 - tcc:18600656 1800.79