Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01845 GAAATGTCTTCTTCAAGACCGAGTCAATCATCAAGCAACTCAGGTCGATCAAGACACAGTGCTAGAATAATTGCTCAGACTACTGTAGATGCAAAACTTCATGCAAATTATGAAGAATCCAGTAGTTCTTTTGACTACTCAAGTTCAGTGCGGTTTACCAATGCTTTTGGTGAAGATCAACGACCCAAGTCTGACAAAGTCACAACAGCTTACCTCCATCACATACAAAAAGGCAAGCATATCCAGCCATTTGGCTGCTTGTTGGCTTTAGATGAGAAAACCTTCAAAGTCATTGCATACAGTGAAAATGCCACGGAAATGCTAACTATGGTGAGTCATGCAGTCCCAAGTGTTGGTGATCATCCAGTTCTTGGCATTGGAATTGATTTTAGGACCATTTTCACTGCCCCAAGCGCCTCAGCCTTGCAGAAGGTTCTTGGTTTTGGAGAGGTTACACTTCTGAATCCTGTGTTAGTTCATTGTAAGACATCTGGGAGGCCCTTCTATGCAATCGTTCATCGTGTTACCGGCAGCTTGATCATTGATTTTGAACCTGTGAAGCCTTATGAAATACCAATGACTGCAGCTGGGGCCCTACAATCTTATAGGCTTGCAGCAAAAGCTATTAACAGATTGCAGTCTCTGCCCAGTGGGAGCATGGAAAGACTTTGTGATACAATGGTTCAAGAGGTTTATGAACTCACAGGCTATGACAGAGTGATGGTCTACAAATTTCACGATGATGACCATGGGGAAGTGGTCTCTGAAGTCACAAAGCCTGGGTTGGAGCCATATCTGGGGTTGCACTATCCAGCTACTGATATCCCTCAAGCTGCACGGTTTTTATTCATGAAGAATAAGGTTCGAATTATTGTTGATTGTCGTGCAAAACCTGTGAATGTGCTCCAAGACGAGAAACTTTCCTTTGATCTAACTTTATGTGGTTCAACTTTAAGGGCCCCTCATAGTTGCCATTTGCAGTACATGGAGAACATGAATTCCATCGCTTCTCTGGCTATGGCTGTTGTGGTCAACGAGGAAGATGACGAGAATGACAATCCCAATCCTGTGCTGCCACAAAAGAGAAAGAGATTATGGGGTTTAGTAGTTTGCCATAACACAACCCCCAGGTTTGTACCATTCCCTCTAAGATATGCATGTGAATTTCTCGCTCAAGTATTTGGCATCCATGTCAACAAAGAATTAGAGCTGGAAAATCAGATTGTTGAAAAAAACATTCTACGCACACAAACACTCTTGTGCGACATGTTGATGCGGGACGCACCCTTAGGCATAGTAACACAGAGCCCGAATATAATGGATCTTGTGAAATGTGATGGAGCTGCCATGATGTACAAAAATCAGGTATGGAGATTGGGAATAACTCCAAGTGAAGTCCAGCTCCAAGAAATTGCTTCGTGGCTTTCTGAGCATCATATGGATTCGACTGGATTAAGCACAGATAGTTTGTACGATGCGGGTTTCCCAGGGGCTCTCGCTCTTGGCGATGGAGTCTGTGGAATGGCGACAGTTCGGATAACTTCCAAGGACATGATTTGTTGGTTTCGTACCCATGCTGTCGCGGAAATTCGATGGGGCGGGGCAAAGCATGAAGCTGGTGAAGAGGACGACAGTAGGAAGATGCATCCAAGATCATCTTTCAAAGCTTTTCTTGAAGTAGTTGAAAGGAGAAGTTTTCCCTGGAAGGACTATGAAATGGATGCAATCCATTCCCTGCAGCTTATATTGAGGAATGCACTGAAAGATATGCAAATGGTTGATACGAACAGCAAATCAATTCATGCAAAACTCAGCAACCTCAAGATTGGGGGGATGCAAGAACTAGAAGCAGTTACTGGTGAGATTGTCCGTTTGATTGAGACAGCCATGGTGCCTATTTTGGCTGTTGACGGAGAGGGGCTAGTTAATGGCTGGAATATGAAAATTGCTGAGTTAACTGGTCTTCCTGTTGAGAAAGCGATCGGAAACCATTTTCTCTCTCTTGTGGAGGATTCTTCAGTAGATACAGTCAAGAAGATGTTGTACCTAGCGTTCCAAGGACAAGAGGAGAAACATGTAGAATTTGAGATTAGAACTCACGGGCCTAGGATCGATGCAGGTCCCATTAGCTTAGTTGTGAACGCTTGTGCAAGCAGGGATTTGGAGGAAAATGTTGTTGGAGTGTGTTTTGTGGCTCAAGATATCACTGCTCAGAAGACAGTGATGGACAAGTTCACACGGATAGAAGGTGATTACAAAGCAATTGTGCAGAACCCAAATCCACTAATCCCCCCTATATTTGGCATGGATGAATTTGGCTGGTGCACAGAATGGAACCCAGCAATGACAAAGTTAAGTGGGTGGAAGCGAGATGATGTTGTTGATAAAATACTCTTGGGAGAGGTCTTTGGGACCCAAATGGCCTGCTGTCGAGTCAAGAATCAAGAATTGTGTGTAAATCTTGGTGTAGTCCTTAATAATGCTATGAGTGGCCAAAATCCCGAAAAGATTTCTTTTGGTTTCTATGATCGGAAAGGTAAATACGTAGAATGTCTGTTGTGTGTGAGTAAGAAAACCGACAGAGATGGTACAGTGACTGGAATTTTTTGCTTTTTGCAACTTCCTAGCTTAGAGTTGCAGAAAGCACTCCATGTGCAGCACTTAGCCGAGAAAACTGCCGTAAAGAGATCAAAAGCATTAGCTTATATAAAAAGGCAGATTGGAAGTTCTTTATCTGGCATCATATATTCTAGTGAAATGTTGGAGGGTACTGCATTGGAAGTAGAACAGAAACATCTTCTGCAAACAAGCACACAGTGCCAGCGGCAGCTCAGCAAGGTTCTTGATGACTCAGATCTTGATAGAATCTTTGATGGCTTTTTGGATCTTGAAATGGTTCAGTTTTCTCTACATGAAGTATTGGCTGCTTCGATCAGCCAAGTCATGATGAAGAGCAGAGAAAAGAGTGTTCTCATCCTAAATGAGACTGCTAAAGAGATCCAGAATGAAGCTCTATACGGTGATAATGCGAGGCTTCAGCAAGTGTTGGCTGATTTCTTACTAATATCAGTCAGTTTTTCTCCAGTAGGCAGCCAGATTATTATTTCGGCCAGTCTAACAAAAGATCAATTGGGCCAATCCATAGATCTAGCACATCTGAAGTTCAGAATAACGCAAGGAGGTGGTGGAATACCAGCAGCACTGCTAAATGAATTGTTTGAAAACAATGAAGACAGGTCTGAAGAAGGGGTCAGCTTGCTTGTTAGCAGAAAGCTGGTGAAGCTCATGAATGGAGATGTGCAATATCTGAGAGAAGCGGGCAAGTCTACATTCATCATATCTGTCGAGCTCGCGGCAGGCCACATGCCAATTTAG 3375 43.29 EMSSSRPSQSSSNSGRSRHSARIIAQTTVDAKLHANYEESSSSFDYSSSVRFTNAFGEDQRPKSDKVTTAYLHHIQKGKHIQPFGCLLALDEKTFKVIAYSENATEMLTMVSHAVPSVGDHPVLGIGIDFRTIFTAPSASALQKVLGFGEVTLLNPVLVHCKTSGRPFYAIVHRVTGSLIIDFEPVKPYEIPMTAAGALQSYRLAAKAINRLQSLPSGSMERLCDTMVQEVYELTGYDRVMVYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRIIVDCRAKPVNVLQDEKLSFDLTLCGSTLRAPHSCHLQYMENMNSIASLAMAVVVNEEDDENDNPNPVLPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFGIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSPNIMDLVKCDGAAMMYKNQVWRLGITPSEVQLQEIASWLSEHHMDSTGLSTDSLYDAGFPGALALGDGVCGMATVRITSKDMICWFRTHAVAEIRWGGAKHEAGEEDDSRKMHPRSSFKAFLEVVERRSFPWKDYEMDAIHSLQLILRNALKDMQMVDTNSKSIHAKLSNLKIGGMQELEAVTGEIVRLIETAMVPILAVDGEGLVNGWNMKIAELTGLPVEKAIGNHFLSLVEDSSVDTVKKMLYLAFQGQEEKHVEFEIRTHGPRIDAGPISLVVNACASRDLEENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGMDEFGWCTEWNPAMTKLSGWKRDDVVDKILLGEVFGTQMACCRVKNQELCVNLGVVLNNAMSGQNPEKISFGFYDRKGKYVECLLCVSKKTDRDGTVTGIFCFLQLPSLELQKALHVQHLAEKTAVKRSKALAYIKRQIGSSLSGIIYSSEMLEGTALEVEQKHLLQTSTQCQRQLSKVLDDSDLDRIFDGFLDLEMVQFSLHEVLAASISQVMMKSREKSVLILNETAKEIQNEALYGDNARLQQVLADFLLISVSFSPVGSQIIISASLTKDQLGQSIDLAHLKFRITQGGGGIPAALLNELFENNEDRSEEGVSLLVSRKLVKLMNGDVQYLREAGKSTFIISVELAAGHMPI 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20583218 20587747 + Bpe009676.1 Bpe02g01845 99994

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01845 1124 PRINTS Phytochrome signature 713 730 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 733 753 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 550 568 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 432 452 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 517 536 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 621 637 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 PRINTS Phytochrome signature 640 655 IPR001294 GO:0006355|GO:0009584
Bpe02g01845 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 187 IPR035965 -
Bpe02g01845 1124 SMART HKATPase_4 1007 1119 IPR003594 -
Bpe02g01845 1124 Coils Coil 399 419 - -
Bpe02g01845 1124 ProSiteProfiles PAS repeat profile. 618 688 IPR000014 -
Bpe02g01845 1124 Pfam GAF domain 219 402 IPR003018 GO:0005515
Bpe02g01845 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 392 IPR016132 -
Bpe02g01845 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 765 871 IPR035965 -
Bpe02g01845 1124 MobiDBLite consensus disorder prediction 1 23 - -
Bpe02g01845 1124 ProSiteProfiles Histidine kinase domain profile. 902 1119 IPR005467 -
Bpe02g01845 1124 SMART gaf_1 219 412 IPR003018 GO:0005515
Bpe02g01845 1124 Gene3D - 200 563 IPR029016 -
Bpe02g01845 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Bpe02g01845 1124 Gene3D PAS domain 75 322 - -
Bpe02g01845 1124 SUPERFAMILY GAF domain-like 410 589 - -
Bpe02g01845 1124 Pfam PAS fold 751 873 IPR013767 GO:0006355
Bpe02g01845 1124 Pfam PAS fold 621 735 IPR013767 GO:0006355
Bpe02g01845 1124 Gene3D - 958 1120 IPR036890 -
Bpe02g01845 1124 CDD PAS 762 873 IPR000014 -
Bpe02g01845 1124 Gene3D PAS domain 764 874 - -
Bpe02g01845 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1007 1117 IPR003594 -
Bpe02g01845 1124 Pfam PAS fold 70 186 IPR013654 GO:0006355
Bpe02g01845 1124 Gene3D PAS domain 614 753 - -
Bpe02g01845 1124 PIRSF Phytochrome_conventional 1 1122 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bpe02g01845 1124 SUPERFAMILY GAF domain-like 198 399 - -
Bpe02g01845 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 952 1113 IPR036890 -
Bpe02g01845 1124 CDD PAS 631 735 IPR000014 -
Bpe02g01845 1124 PANTHER PHYTOCHROME A 2 1120 - -
Bpe02g01845 1124 Pfam Phytochrome region 415 589 IPR013515 GO:0006355|GO:0009584
Bpe02g01845 1124 PANTHER TWO-COMPONENT HISTIDINE KINASE 2 1120 - -
Bpe02g01845 1124 SMART pas_2 620 686 IPR000014 -
Bpe02g01845 1124 SMART pas_2 750 819 IPR000014 -
Bpe02g01845 1124 ProSiteProfiles PAS repeat profile. 751 803 IPR000014 -
Bpe02g01845 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 624 731 IPR035965 -
Bpe02g01845 1124 Gene3D - 407 580 IPR043150 -
Bpe02g01845 1124 TIGRFAM sensory_box: PAS domain S-box protein 625 741 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01845 K12120 PHYA; phytochrome A - tcc:18600656 1800.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01845 Bpe-Chr2:20583218 Bpe07g00650 Bpe-Chr7:13229839 0 dispersed
Bpe02g01845 Bpe-Chr2:20583218 Bpe02g00962 Bpe-Chr2:8964442 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00409 . 493 1672 Histidine Kinase Gene Family AT2G17820 64.9 0.0e+00 1452.6
Bpe15g00478 . 564 1761 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1403.3
Bpe03g00033 . 17 996 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1351.3
Bpe14g00730 . 303 1276 Histidine Kinase Gene Family AT2G01830 52.3 6.5e-276 947.2
Bpe05g00945 . 57 1056 Histidine Kinase Gene Family AT2G01830 50.3 2.2e-263 905.6
Bpe02g00521 . 1 1048 Histidine Kinase Gene Family AT5G10720 53.8 5.4e-279 957.2
Bpe02g01845 . 2 1121 Histidine Kinase Gene Family AT1G09570 77.2 0.0e+00 1759.2
Bpe07g00650 . 12 1119 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1253.0
Bpe05g00798 BCT 34 1122 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1168.3
Bpe13g00697 BCT 29 1120 Histidine Kinase Gene Family AT1G09570 52.9 0.0e+00 1158.3
Bpe02g00962 . 36 1111 Histidine Kinase Gene Family AT1G09570 50.4 6.9e-313 1070.1
Bpe05g00798 BCT 12 1058 Histidine Kinase Gene Family AT2G18790 78.1 0.0e+00 1636.3
Bpe13g00697 BCT 30 1084 Histidine Kinase Gene Family AT2G18790 75.0 0.0e+00 1599.7
Bpe02g00962 . 15 1050 Histidine Kinase Gene Family AT2G18790 61.9 0.0e+00 1279.6
Bpe11g01109 . 15 1045 Histidine Kinase Gene Family AT2G18790 58.4 0.0e+00 1214.5
Bpe07g00650 . 23 1074 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1111.3
Bpe02g01845 . 22 1056 Histidine Kinase Gene Family AT2G18790 51.2 1.4e-308 1055.8
Bpe07g00650 . 10 1115 Histidine Kinase Gene Family AT5G35840 62.3 0.0e+00 1398.6
Bpe13g00697 BCT 21 1122 Histidine Kinase Gene Family AT5G35840 51.4 0.0e+00 1124.4
Bpe05g00798 BCT 37 1118 Histidine Kinase Gene Family AT5G35840 52.2 0.0e+00 1119.4
Bpe02g01845 . 10 1116 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1107.8
Bpe05g00798 BCT 8 1118 Histidine Kinase Gene Family AT4G16250 74.1 0.0e+00 1655.2
Bpe13g00697 BCT 30 1122 Histidine Kinase Gene Family AT4G16250 74.2 0.0e+00 1642.5
Bpe02g00962 . 35 1111 Histidine Kinase Gene Family AT4G16250 60.1 0.0e+00 1305.0
Bpe11g01109 . 20 1107 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1245.0
Bpe07g00650 . 24 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1144.8
Bpe02g00962 . 14 1112 Histidine Kinase Gene Family AT4G18130 63.9 0.0e+00 1396.3
Bpe11g01109 . 14 1108 Histidine Kinase Gene Family AT4G18130 61.2 0.0e+00 1327.0
Bpe05g00798 BCT 37 1119 Histidine Kinase Gene Family AT4G18130 59.1 0.0e+00 1258.8
Bpe13g00697 BCT 38 1116 Histidine Kinase Gene Family AT4G18130 58.2 0.0e+00 1249.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56