Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01848 ATGGGGACTGAAAATTCAGGTAAGCCTACAAGACCAGCTTATACTCCTTTTGCTGCACCACCTCGTACCATGTCACCTTTTTCATCATCCGGACCCATTGTTGGAGCTGAGACCAGCGTATTTAGACCTTCACCTCCAGTGGCTCCTCAGAATTTCATGTCTGCTTCATCGTCTTCACCTCTATCTGGGTCACAGGCTTCTGGTTTTCGATCAATGCCACCAGTTGGGTTCAATGATCCATCTCTGCCGCCTGCACCAGCTTCCAATCTTCCTGCAATTGGTGGTTCTTTTCAGCCATATACAACACCCCAATTTACTCCCGTACGTCCCTTTAGTGGGCAACCACTTGTTCAACCTCTTGGAGGTCAAGTAACACCTCCAACTGTTCCCTATCATTCACAATCTCAAATTCCTCCCCCATCAGTTGCACCTCCAGTGCATAATTTACATCCTCCACCAAATACAAATATACCTCCATCTTTACCAGATGCATCATTTACAGCTCCTCGACAAAATTTTCAGCAGCCTTTCCCTGGGTATGTCCGAAGGCAGCCTAATACAGATCCACTAATGCCACCTATACAACCTTCTTTTGTTAATCAAGGACGTGTTACACCTTCTGCCACTACTCCAACTTCCACCAATCTTCCTCCCCAAGGAGGTTATGGACCAGCTCCACCCAATTTGCAGGCGAGGGGACTGATGCAGCATGTAGCAACAGGGCCTCCAACGGGTTCTTTTCAAGGCTTGATTGAAGATTTCAGTTCCTTAAATGTGGGATCTATTCCTGGATCAATTGATGTAGGAATTGATCCCAAAGCTCTGCCAAGGCCTTTGAATGGTGATGAAGAGCCTAAATTGCTTTCTGAGATGTTTCCCCAAAACTGCCATTCAAGGTATTTACGGCTGACAACCAGTGGGATACCCAATTCCCAATCATTGGTTTCAAGGTGGCATTTACCTCTTGGAGCAGTAATCTGTCCACTTGCTGAAGCTCCTGATGGGGAGGAAGTGCCAATAGTTAATTTTGCTTCAACAGGCATTATTCGCTGCAGAAGGTGTCGCACTTATGTAAATCCATATGCTACTTTCACTGATTCCGGAAGAAAGTGGCGATGCAGCATCTGTTCTTTGCTTAATGATGTTCCTGGGGAATATTTTTCCCATTTGGATGCTGCTGGAAGAAGAATTGATTTAGATCAACGTCCTGAGCTTACAAATGGTAGTGTGGAATTTGTAGCTCCAACTGAGTATATGGTGCGGCCACCTATGCCACCGCAATACTTTTTCCTCATTGATGTTTCTGTGTCTGCTGCTAGAAGTGGAATGTTGGAGGTTGTGGCCAAGACAATCAAATCATATTTGGATAAGCTGCCTGGCTTTCCTAGAACACAAATAGGATTTGCAACGTTTGATAGCACCATACATTTTTATAATATGAAGTCATCTTTGACTCAGCCACAAATGATGGTGGTATCGGATTTAGATGACGTATTTGTCCCATTACCTGATGATCTCCTGGTCAACTTGTCTGAATCAAGAAGTGTGGTGGAAACGTTTCTAGATAGCCTGCCTTCTATGTTTCAGGACAATGTGAATGTTGAATCTGCTTTTGGTCCTGCATTGAAAGCAGCATTTATGGTTATGAGTCCACTGGGGGGAAAATTGTTAATATTTCAAAACACACTTCCTTCTCTTGGTGTTGGTCGCCTGAAATTGAGAGGAGATGATCTTCGCATTTACGGAACTGACAAAGAACCTGCATCAAGAGTACCGGAAGATCCATTCTACAAGCAAATGGCTGCAGATTTTACAAAGTTTCAGATTGGAGTCGATATCTTTGCATTTAGTGATAAATACACAGACATAGCCTCTTTGGGTGCTTTGGCAAAGTATACTGGAGGTCAGGTGTATTATTATCCTGGGTTCCAATCTGCCATTCACGGGGAGAAGTTGAGACATGAATTGGCCAGAGACCTTACAAGAGAAACTGCTTGGGAAGCTGTATTGCGCATAAGATGTGGAAAAGGAGTTCGCTTTACATCTTATCATGGGAATTTTATGTTAAGGTCCACTGATTTACTGTCACTTCCAGCTGTAGATTGCGATAAAGCATTTGCAATGCAGTTATCTCTTGAAGAGACATTACTGACAACACAGACAGTATATTTTCAAGTTGCTTTGCTATACACTGCTTCTTGTGGAGAGCGACGTATCAGAGTACATACGGCAGCAGCACCGGTGGTTACAGATTTGGGAGAGATGTATCGGCAGGCTGACGTTGGTGCAGTACTTTCCTTGTTTTCTAGACTAGCAATTGAGAAGACATTGTCTCATAAGCTGGAAGATGCACGGACATCTGTACAACAAAGAATAGTAAAAGCATTAAGAGAATATCGGAATCTTTATGCTGTGCAACATCGCTTGGGAGGCAGGCTGATATATCCTGAGTCTCTGAGGTTCTTGCCTTTGTATGGATTAGCGCTATGTAAGTCAGTAGCCCTTCGCGGTGGATATGCTGATGCTTCCCTTGATGAACGCTGTGCATCTGGTCACTCAATGATGATAATGCCTGTTAGTAATTTGTTGAAGCTGTTGTATCCCTCACTCATTCGACTTGATAACTATCTTTTAAAGGGAACTGACTTTAAAAGCATAGGGGAAAATTTACCTCTTGCTACCGATAGCCTAGACTCCAGAGGTCTGTATTTATATGATGATGGTCTTCGCTTTATTTTATGGTTTGGACGGGGTCTTTCACCTGATGTGGCTATGAATCTACTTGGCACTGACTTTGCAACAGAATTATCAAAGGTAATTCTCTCTCGACATGACAATGAAATGTCGAAGAAGTTGATGACGGCACTCGACAAATTTAGAGAACGCGATCGTTCATATTATCAACTCTGTCATCTTGTTCGACAAGGTGAACAACCCAGAGAAGGCTTCCTACTCCTCACAAATCTTGTAGAGGAGCAGATGGGTGGTACTAGTGGTTATGTTGATTGGATATTACAAATGCACAGACAAGTCCAGCAAAATGCATAA 3048 43.31 MGTENSGKPTRPAYTPFAAPPRTMSPFSSSGPIVGAETSVFRPSPPVAPQNFMSASSSSPLSGSQASGFRSMPPVGFNDPSLPPAPASNLPAIGGSFQPYTTPQFTPVRPFSGQPLVQPLGGQVTPPTVPYHSQSQIPPPSVAPPVHNLHPPPNTNIPPSLPDASFTAPRQNFQQPFPGYVRRQPNTDPLMPPIQPSFVNQGRVTPSATTPTSTNLPPQGGYGPAPPNLQARGLMQHVATGPPTGSFQGLIEDFSSLNVGSIPGSIDVGIDPKALPRPLNGDEEPKLLSEMFPQNCHSRYLRLTTSGIPNSQSLVSRWHLPLGAVICPLAEAPDGEEVPIVNFASTGIIRCRRCRTYVNPYATFTDSGRKWRCSICSLLNDVPGEYFSHLDAAGRRIDLDQRPELTNGSVEFVAPTEYMVRPPMPPQYFFLIDVSVSAARSGMLEVVAKTIKSYLDKLPGFPRTQIGFATFDSTIHFYNMKSSLTQPQMMVVSDLDDVFVPLPDDLLVNLSESRSVVETFLDSLPSMFQDNVNVESAFGPALKAAFMVMSPLGGKLLIFQNTLPSLGVGRLKLRGDDLRIYGTDKEPASRVPEDPFYKQMAADFTKFQIGVDIFAFSDKYTDIASLGALAKYTGGQVYYYPGFQSAIHGEKLRHELARDLTRETAWEAVLRIRCGKGVRFTSYHGNFMLRSTDLLSLPAVDCDKAFAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTAAAPVVTDLGEMYRQADVGAVLSLFSRLAIEKTLSHKLEDARTSVQQRIVKALREYRNLYAVQHRLGGRLIYPESLRFLPLYGLALCKSVALRGGYADASLDERCASGHSMMIMPVSNLLKLLYPSLIRLDNYLLKGTDFKSIGENLPLATDSLDSRGLYLYDDGLRFILWFGRGLSPDVAMNLLGTDFATELSKVILSRHDNEMSKKLMTALDKFRERDRSYYQLCHLVRQGEQPREGFLLLTNLVEEQMGGTSGYVDWILQMHRQVQQNA 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20604651 20617683 - Bpe009679.1 Bpe02g01848 99997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01848 1015 SUPERFAMILY beta-sandwich domain of Sec23/24 138 758 - -
Bpe02g01848 1015 Pfam Sec23/Sec24 helical domain 760 863 IPR006900 GO:0006886|GO:0006888|GO:0030127
Bpe02g01848 1015 SUPERFAMILY Helical domain of Sec23/24 760 867 IPR036175 GO:0006886|GO:0006888|GO:0030127
Bpe02g01848 1015 SUPERFAMILY Zn-finger domain of Sec23/24 338 422 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Bpe02g01848 1015 MobiDBLite consensus disorder prediction 200 230 - -
Bpe02g01848 1015 CDD Sec24-like 423 664 IPR041742 GO:0006886|GO:0006888|GO:0030127
Bpe02g01848 1015 Gene3D von Willebrand factor, type A domain 425 662 IPR036465 -
Bpe02g01848 1015 Gene3D Severin 868 992 IPR029006 -
Bpe02g01848 1015 Pfam Sec23/Sec24 trunk domain 423 659 IPR006896 GO:0006886|GO:0006888|GO:0030127
Bpe02g01848 1015 Gene3D - 294 407 - -
Bpe02g01848 1015 PANTHER SEC24-RELATED PROTEIN 83 1014 - -
Bpe02g01848 1015 Gene3D Sec23/Sec24 helical domain 749 1011 - -
Bpe02g01848 1015 SUPERFAMILY vWA-like 423 662 IPR036465 -
Bpe02g01848 1015 MobiDBLite consensus disorder prediction 49 71 - -
Bpe02g01848 1015 MobiDBLite consensus disorder prediction 200 219 - -
Bpe02g01848 1015 Gene3D - 296 748 - -
Bpe02g01848 1015 MobiDBLite consensus disorder prediction 1 90 - -
Bpe02g01848 1015 Pfam Sec23/Sec24 beta-sandwich domain 665 748 IPR012990 -
Bpe02g01848 1015 PANTHER BNAC03G35080D PROTEIN 83 1014 - -
Bpe02g01848 1015 Pfam Sec23/Sec24 zinc finger 348 386 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Bpe02g01848 1015 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 869 1013 IPR036180 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01848 K14007 SEC24; protein transport protein SEC24 - csv:101223095 1511.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01848 Bpe-Chr2:20604651 Bpe05g01124 Bpe-Chr5:23565578 1.79E-156 dispersed
Bpe02g01848 Bpe-Chr2:20604651 Bpe04g01055 Bpe-Chr4:7760376 7.28E-166 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g159 . . . . . Bpe02g01848 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006015 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39