Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01898 ATGGCGTCTACTCGAGAAGGTCACTATAGAGGGGTAAGAAAGAGGCCATGGGGACGATACGCGGCTGAGATTCGCGATCCGTGGAAGAAGACGAGGGTTTGGTTAGGAACCTTTGATACGCCGGAAGAAGCAGCTCTTGCCTACGACGGGGCTGCTAGATCTCTCCGGGGAGCTAAAGCTAAGACAAACTTCCCAGCTCCGGTGGCCTCCGGTCTCGCTGTTGATCTGAATGTTCCAACCAGAGCTCAGTGGACTCAGCCGCCGTCTTCCCGACTGATACTTGGCAATTTCATGGAGACTGGTTCGAGCAACGTAGACGGGGAGGCTGTTCTTGATAGGCGAGTGGCGCCGGCGGAGGAAGAATCTCCGACGGTGTCTTTTTTGGGGCTTGTCCGACGTGGTTTGCCCATTGATCTGAATGAGCCTCCTCCTCTATGGCTTATGTAA 447 54.81 MASTREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAPVASGLAVDLNVPTRAQWTQPPSSRLILGNFMETGSSNVDGEAVLDRRVAPAEEESPTVSFLGLVRRGLPIDLNEPPPLWLM 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20973702 20974148 + Bpe009725.1 Bpe02g01898 100047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01898 148 Gene3D AP2/ERF domain 8 66 IPR036955 GO:0003700|GO:0006355
Bpe02g01898 148 SUPERFAMILY DNA-binding domain 8 66 IPR016177 GO:0003677
Bpe02g01898 148 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 101 - -
Bpe02g01898 148 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700|GO:0006355
Bpe02g01898 148 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 1 101 - -
Bpe02g01898 148 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Bpe02g01898 148 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700|GO:0006355
Bpe02g01898 148 CDD AP2 8 66 IPR001471 GO:0003700|GO:0006355
Bpe02g01898 148 SMART rav1_2 8 71 IPR001471 GO:0003700|GO:0006355
Bpe02g01898 148 Pfam AP2 domain 8 57 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01898 - - - jre:108983244 214.927
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe01g00438 Bpe02g01898 CCT
Bpe01g00438 Bpe02g01898 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00438 Bpe-Chr1:2691220 Bpe02g01898 Bpe-Chr2:20973702 1.60E-30 dispersed
Bpe02g00243 Bpe-Chr2:1661642 Bpe02g01898 Bpe-Chr2:20973702 1.13E-56 dispersed
Bpe02g01898 Bpe-Chr2:20973702 Bpe04g00335 Bpe-Chr4:2132206 1.43E-62 dispersed
Bpe11g00466 Bpe-Chr11:3616234 Bpe02g01898 Bpe-Chr2:20973702 3.81E-32 dispersed
Bpe14g01138 Bpe-Chr14:8482915 Bpe02g01898 Bpe-Chr2:20973702 1.12E-23 dispersed
Bpe13g01483 Bpe-Chr13:20192258 Bpe02g01898 Bpe-Chr2:20973702 4.37E-26 transposed
Bpe14g00828 Bpe-Chr14:6241581 Bpe02g01898 Bpe-Chr2:20973702 6.39E-25 transposed
Bpe02g01898 Bpe-Chr2:20973702 Bpe08g00389 Bpe-Chr8:2393308 7.46E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g184 . . . Bda09g00524 . Bpe02g01898 . . . . Cma01g01222 Cma09g00846 Car01g01044 Car09g00759 Sed04g2417 . . Bhi09g03458 Tan01g4370 Cmetu07g1192 . Hepe01g1405 Mch11g1046 . Cla11g01739 Cam11g1809 Cec11g1829 Cco11g1835 Clacu11g1969 Cmu11g1779 Cre11g2185 Cone6ag0166 Cone9ag0191 . . Lsi04g02049 Csa04g02321 Chy07g00055 Cme07g00574 . . . . . Bpe01g00438 . . . Cmo01g01275 Cmo09g00840 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003730 1 1 3 3 3 1 2 1 1 1 1 1 2 1 1 1 1 2 0 1 1 2 1 2 3 2 2 2 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21012 PF00847 AP2 1.90E-14 CL0081 Bpe TF