Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01904 ATGGCGGGTAGGTTCGGGCTCTCCTCCTCCGCTCCGGCAACCTTTGTCGTCACCAGCACTCCGGCTCCGGACCTTGCTCTTACCAATCTTGCCTACTGCTCGCATTCCGATCTCCAAGCCTTCATGGTTCCTGCCTCCAAGCTCTTCCTCGCTTTAGTTGGCGATTCCTTCGAATCGCCTAAATTTTCTTTTTCATCAACTGCTCACGAGAGCATTCGCAGTGGCCAAATTGCCTTAAATGCTATTCAACGAAGGCATGCTAGAGTTTCTGCTGGCGACATGATATCTATTAGCAGATTCATCCCTCCTGAAAATTTCAACTTGGCAATGCTCACGCTGGAGATAGAATTTGTAAAGAAGGGAACTAAAAATGAGCAGGTTGATGCTGTTCTACTCAGTAATCAGCTTAGGAAGAGATTTATCAACCAGGTCATGACAGCAGGGCAAAGAGTCTCATTTGAGTATCATGGCAACAATTACATCTTCACGGTCAATCAAGCTGCTGTTGAGGGACAAGATAGATCTAAAACTCTTGAAAGAGGGATGATTTCAGGTGAAACGTACTTTGTATTTGAAACATCAAATGCAAGCGGGATTAAGATCGTCAATCAGCGAGAAGCTGCTAGTAGTAATATATTCAGGCAAAAAGAGTTTAATCTTCAGGCACTTGGTATCGGTGGACTAAGTGCAGAGTTTGCGGACATATTTCGAAGAGCCTTTGCCTCGCGCGTTTTTCCTCCACATGTGACAAGCAAATTGGGGATCAAGCATGTTAAAGGAATGCTGCTTTTTGGGCCTCCTGGAACTGGGAAAACTCTAATGGCTCGTCAAATTGGGAAAATGTTAAATGGAAAGGAACCAAAGATTGTTAATGGCCCTGAAGTCCTGAGTAAGTTTGTTGGTGAAACAGAAAAGAATGTTCGCGACCTGTTTGCTGATGCCGAGAATGATCAAAGAACTCTAGGGGACCAAAGTGATTTGCATGTCATAATATTTGATGAGATTGATGCAATCTGTAAGTCTCGAGGATCAACAAGAGATGGCACAGGTGTTCATGATAGTATTGTGAACCAACTACTTACCAAGATAGATGGTGTGGAGTCATTAAACAATGTGTTGCTTATTGGAATGACAAACAGGAAAGATTTGCTTGATGAGGCCCTTTTAAGACCAGGGCGTCTGGAGGTACAAGTTGAGATCAGCCTACCTGATGAAAATGGACGTTTGCAGATTCTTCAAATTCATACAAACAAAATGAAGGAAAATTCATTTCTTGCCCCAGATATAAACCTTCAAGAAATTGCTGCTCGCACAAAGAACTACAGTGGTGCAGAACTTGAGGGTGTTGTAAAAAGTGCTGTATCTTATGCTTTGAATAGACAATTAAGTCTCGATGATCTTACCAAGCCGGTGGATGAAGAAAGTATCAAAGTTACAATGGAAGATTTTTTGAATGCACTTCAAGAAATTATTCCTGCATTTGGAGCCTCCACTGATGACCTTGAGCGATGCAGGCTTAATGGTATGGTTGAATGCGGTGATCGACATAAACACATTTATCAACGAGCTATGTTACTTGTGGAGCAAGTTAAAGTGAGCAAAGGAAGTCCTTTAGTTACTTGCCTTCTGGAAGGCCCTAGTGGCAGTGGGAAAACAGCATTGGCAGCAACTGTTGGAATTGACAGTGACTTTCCATATGTCAAGATTGTCTCTGCTGAAACAATGATCGGTCTTCTTGAAAGCACTAAATGTGCACATATTGTCAAGGTTTTTGAAGATGCATACAAATCGCCATTGAGCATTATTATACTAGATGACATTGAAAGGTTACTGGAATATGTTGCAATTGGTCCTCGTTTTTCAAATTTGATTTCTCAGACATTGATGGTCCTTCTCAAGCGCCTTCCCCCTAAGGGAAAAAAGCTTCTGGTAATAGGAACTACAAGTGAAGTGGGCTTTTTAGATTCTGTTGGCATTACCGACGCTTTTGCAGTCACTTATCACGCTCCTACGTTGAAAACTGATGATGCAAAGAAGGTACTGCAACAACTGAATGTTTTTGCAAATGAAGATGTCGATGCTGCTGCAGAGGCCCTGAACGATATGCCAATCAAGAAGCTCTACATGTTAATCGAAATGGCGGCTCAGGGTGAGCACGGTGGATCGGCCGAGGCTATCTATTCTGGCACAGAAAAGATTAAGATCTCACACTTCTACGATTGCCTTCAGGATATTGTCCGGTATTAG 2247 42.59 MAGRFGLSSSAPATFVVTSTPAPDLALTNLAYCSHSDLQAFMVPASKLFLALVGDSFESPKFSFSSTAHESIRSGQIALNAIQRRHARVSAGDMISISRFIPPENFNLAMLTLEIEFVKKGTKNEQVDAVLLSNQLRKRFINQVMTAGQRVSFEYHGNNYIFTVNQAAVEGQDRSKTLERGMISGETYFVFETSNASGIKIVNQREAASSNIFRQKEFNLQALGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLFGPPGTGKTLMARQIGKMLNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAENDQRTLGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDINLQEIAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKPVDEESIKVTMEDFLNALQEIIPAFGASTDDLERCRLNGMVECGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATVGIDSDFPYVKIVSAETMIGLLESTKCAHIVKVFEDAYKSPLSIIILDDIERLLEYVAIGPRFSNLISQTLMVLLKRLPPKGKKLLVIGTTSEVGFLDSVGITDAFAVTYHAPTLKTDDAKKVLQQLNVFANEDVDAAAEALNDMPIKKLYMLIEMAAQGEHGGSAEAIYSGTEKIKISHFYDCLQDIVRY 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21015957 21023191 - Bpe009730.1 Bpe02g01904 100053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01904 748 Gene3D - 499 670 IPR027417 -
Bpe02g01904 748 Pfam ATPase family associated with various cellular activities (AAA) 261 401 IPR003959 GO:0005524|GO:0016887
Bpe02g01904 748 Pfam ATPase family associated with various cellular activities (AAA) 542 655 IPR003959 GO:0005524|GO:0016887
Bpe02g01904 748 Gene3D - 12 100 - -
Bpe02g01904 748 SMART CDC48_N_2 14 102 IPR003338 -
Bpe02g01904 748 CDD AAA 259 402 - -
Bpe02g01904 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 501 716 IPR027417 -
Bpe02g01904 748 SMART AAA_5 257 404 IPR003593 -
Bpe02g01904 748 SMART AAA_5 537 675 IPR003593 -
Bpe02g01904 748 Gene3D - 211 402 IPR027417 -
Bpe02g01904 748 PANTHER BNAA03G50350D PROTEIN 1 40 - -
Bpe02g01904 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 500 IPR027417 -
Bpe02g01904 748 Gene3D - 403 490 - -
Bpe02g01904 748 SUPERFAMILY ADC-like 11 100 IPR009010 -
Bpe02g01904 748 Pfam AAA+ lid domain 428 483 IPR041569 -
Bpe02g01904 748 ProSitePatterns AAA-protein family signature. 372 390 IPR003960 GO:0005524|GO:0016887
Bpe02g01904 748 Pfam Cell division protein 48 (CDC48), domain 2 127 171 IPR004201 -
Bpe02g01904 748 SUPERFAMILY Cdc48 domain 2-like 103 206 IPR029067 -
Bpe02g01904 748 PANTHER BNAA03G50350D PROTEIN 65 748 - -
Bpe02g01904 748 PANTHER VESICULAR-FUSION PROTEIN NSF 65 748 IPR039812 GO:0016887|GO:0035494
Bpe02g01904 748 CDD AAA 531 649 - -
Bpe02g01904 748 Gene3D - 103 201 - -
Bpe02g01904 748 PANTHER VESICULAR-FUSION PROTEIN NSF 1 40 IPR039812 GO:0016887|GO:0035494
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01904 K06027 NSF, SEC18; vesicle-fusing ATPase [EC:3.6.4.6] - zju:107424747 1293.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01904 Bpe-Chr2:21015957 Bpe04g00687 Bpe-Chr4:4402373 5.41E-36 dispersed
Bpe11g01153 Bpe-Chr11:8547183 Bpe02g01904 Bpe-Chr2:21015957 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g226 . . . . . Bpe02g01904 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006415 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 2 1 1 1 1 1 1 1 38