Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01919 ATGTCTTTCCCGTCGTCTACGAAGGTGCTAGTCGTTTCGATCGGAGTTGTTTTTGTGGCTCTCGCTCTCAAAATCTCAGTTCCTTTAGTTATAGAGTTTTCGCTAACTCAAGTTCCTCTGATTTGGAGCATTTTTGTATCTTGGCTGAGACCTCCATACCTCTACGTCATCATTAATGGAATCATCATTTCCATTGCTGCGTCCTCCCGATTCCACCAGAAAGAGATTGAGGACCGCGTTGATAAATCTTCGACGGAGAGGATTTCTTCGGATCTGGGTTATGCAGGGAAGATTCCGAAGGAGATATCTACTGAGTGTCAAATAGCAGAGTCGCCGGGAGTTTCTGTGCAGGGAGAAGAAGTAATCGAGGTGAAGCCTATAGAAGCAATCACAGAAGTTGAACAGAAAGAGAACGACTTTTTGACCGGACCCCCTTCGTTGACGCCGTCGAGTAGGGTGGATTCATGGGAGTTCTATTTACCTGAAGAGAAGCCTCCCGTTTCTGCGAGATTCAGTCACCGGAAACCGGCCAAATCTAGTCCCGAAGGGGGGAAATCTCTGAAGGTTTCGAAACCCAAGAAGCACGAAACTCTGGAGAATACATGGAAAGCAATAACAGACGGGCGGGCTATGCCGTTGAGCAGGCACATGAAGAAGTGCGAGACGTGGGAAAATCATGGGCGACAGAAGATCAACCTAGAGATACCGGAACAATCGCTTGTGAAGAAATCGGAGACGTTCAAAGACAGAACAAATCAACAAATGTCGCCGGTGAATGTGTCTCCGGGAACGGTGAAAATGAGGAGGGAGGCGTCACTGAGCCAGGACGAGTTGAATAGGCGAGTGGAGGCGTTCATAAAGAAGTTCAATGAAGAAATGAGGATGCAGAGGCAGGAATCGTTGAATCAGTACAAGGAGATGGTCGGCCGCTGA 933 48.02 MSFPSSTKVLVVSIGVVFVALALKISVPLVIEFSLTQVPLIWSIFVSWLRPPYLYVIINGIIISIAASSRFHQKEIEDRVDKSSTERISSDLGYAGKIPKEISTECQIAESPGVSVQGEEVIEVKPIEAITEVEQKENDFLTGPPSLTPSSRVDSWEFYLPEEKPPVSARFSHRKPAKSSPEGGKSLKVSKPKKHETLENTWKAITDGRAMPLSRHMKKCETWENHGRQKINLEIPEQSLVKKSETFKDRTNQQMSPVNVSPGTVKMRREASLSQDELNRRVEAFIKKFNEEMRMQRQESLNQYKEMVGR 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21148652 21149698 + Bpe009745.1 Bpe02g01919 100068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01919 310 MobiDBLite consensus disorder prediction 167 195 - -
Bpe02g01919 310 Pfam Domain of unknown function (DUF4408) 39 71 IPR025520 -
Bpe02g01919 310 PANTHER COTTON FIBER (DUF761) 6 310 - -
Bpe02g01919 310 MobiDBLite consensus disorder prediction 248 274 - -
Bpe02g01919 310 Pfam Cotton fibre expressed protein 275 309 IPR008480 -
Bpe02g01919 310 PANTHER COTTON FIBER EXPRESSED PROTEIN 1-LIKE PROTEIN 6 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01919 - - - zju:107422988 323.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01919 Bpe-Chr2:21148652 Bpe08g01159 Bpe-Chr8:13368291 2.58E-80 dispersed
Bpe02g01919 Bpe-Chr2:21148652 Bpe13g00179 Bpe-Chr13:9699774 5.23E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g291 . . Bda07g00275 . . Bpe02g01919 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011242 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 0 31