Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01924 ATGGAGATACAGTTGCCGGACGATTTCAAATGTCCGATTTCGCTGGAAATAATGTCCGACCCCGTCATTCTCTCGTCCGGTCACACTTTTGACCGGAGTTCCATCCAGAAATGGCTTAACGCTGGCCACCGGACTTGTCCTATCACTAAACTACCCTTGACGGACCGTCCATCCCTTATCCCAAACCACGCTCTCAGGAGCCTCATTTCAAACTATTCCCTTGTTTCTCTACCAAATCCTCAACAATCGCCGCCGGAGCTTAAATCCCTTTTCTTCATTCTAACTTCTGCCAGCTCCTCGCTCGACTCGAGAATCGATTCGCTCAATCAACTCGCTCTCGTTTGCAAGGGCGACTCAACTTTGCGTCGGAAACTGACTGAGTCAGGTGTTGTGTCTGCGATTCTGAAATGCGTTGGTTCCAATGAAGCGAGATTGCAAGAGAAAGCGCTGTCTCTGCTGCTCAATCTTAGCTTAGACGACGACAACAAAGTGGGTTTGGTGGCTGAAGGTGCAATTGGGCTCACTGTCGACGCCTTACTAGGTGAGTCGCCGGATATCCGAGCAATGGCTGCAACTATGGTTACGAGCTTGGCTGTGGTAGAGGTAAACAAGGCTACAATCGGGGCGTACCCAACGGCGATCCGAGCTCTGGTTAAGCTTCTTCGTGATGGTAGATCGAGGGAGAAGAAAGAAGCTGCAACTGCCCTTTACGCCATTTGTTCTTTCCCCGATAATCGCCAGAGAGCAGTCGAATGTGGAGCTGTTCCGATTCTGATTCGGGCTGTTAACTCGGGGCTCCTAAGGGCAGTCGAAGTGCTTGGCCTTTTGGCTAAATGTCGAGAAGGCAGAGAGCAGATGGGCATGTTTGATGGCTGTCTGCAGATTTTGATTGGAGTCTTGAGAAATGGTGGATCTAGAGGAATTCAATACGCCCTGCTGACGCTGAATTTGCTCTGCAGTAATAGCGAGGAAATACGCTCAGAGGCAAGAAGAGAAGGGGTTTCAGAGATATGTATCAAATTGGTTGAAGAAGACAATGAAAAGATCAGAAACAATGCTTCAGACTTGATTAAAATTCTGCAAAGTAGGTAA 1092 48.63 MEIQLPDDFKCPISLEIMSDPVILSSGHTFDRSSIQKWLNAGHRTCPITKLPLTDRPSLIPNHALRSLISNYSLVSLPNPQQSPPELKSLFFILTSASSSLDSRIDSLNQLALVCKGDSTLRRKLTESGVVSAILKCVGSNEARLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVDALLGESPDIRAMAATMVTSLAVVEVNKATIGAYPTAIRALVKLLRDGRSREKKEAATALYAICSFPDNRQRAVECGAVPILIRAVNSGLLRAVEVLGLLAKCREGREQMGMFDGCLQILIGVLRNGGSRGIQYALLTLNLLCSNSEEIRSEARREGVSEICIKLVEEDNEKIRNNASDLIKILQSR 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21211809 21212900 + Bpe009750.1 Bpe02g01924 100073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01924 363 SUPERFAMILY ARM repeat 87 357 IPR016024 -
Bpe02g01924 363 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Bpe02g01924 363 PANTHER U BOX DOMAIN-CONTAINING 1 361 - -
Bpe02g01924 363 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 361 - -
Bpe02g01924 363 Gene3D - 85 266 IPR011989 -
Bpe02g01924 363 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Bpe02g01924 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Bpe02g01924 363 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Bpe02g01924 363 Gene3D - 267 361 IPR011989 -
Bpe02g01924 363 CDD RING-Ubox_PUB 9 50 IPR045210 -
Bpe02g01924 363 SUPERFAMILY RING/U-box 3 72 - -
Bpe02g01924 363 SMART arm_5 159 199 IPR000225 GO:0005515
Bpe02g01924 363 SMART arm_5 242 278 IPR000225 GO:0005515
Bpe02g01924 363 SMART arm_5 203 241 IPR000225 GO:0005515
Bpe02g01924 363 SMART arm_5 322 362 IPR000225 GO:0005515
Bpe02g01924 363 SMART arm_5 118 158 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01924 Bpe-Chr2:21211809 Bpe08g01367 Bpe-Chr8:14743875 1.90E-62 dispersed
Bpe01g00378 Bpe-Chr1:2372105 Bpe02g01924 Bpe-Chr2:21211809 7.08E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01924 - - vvi:100855109 492.656