Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01942 ATGTCCTCCTTGATTTGTTCTTCGTTTCGAAGTTTGGTGCCTCAATGGAGGCGCACGAATGTTCGGTTCTTGATTTTCCTTCACTCCAAGAGCACGATTAGCTTTTCCCCTCGCGTTTTTGCTTCGTTGTCGGATGAAGATTCTGTTTCAATGCCCAAACCAGCGCAGTTCGGTTATGATCCCTCGGCGGAGTTGTATGGACTGGTCGTCGATACGAAACCAAGGAATCCTATTTCAGAAGTACCCGAACCCAGGTCCTGGTTTGGTCCAAGTGGCCAGTATATCAAAGAGCTGCCTTGCCCAAATTGCCGGGCCAGGGGCTATACCCCTTGTACTGAATGTGGAATTGAAAGGTCCAGAGTTGACTGCTCATTATGTAATGGAAAGGGGATGATGACATGTCAGCAATGTTCGGGAGATCGCGTCATTTGGGAAGAATCCATTGATGAAAGACCATGGGAGAAAGTGCGCTCTAATTCTCCGCTCCGAATGAAGGAAGATGATGAAGTGGATAACTTAGATATAAAGCCGGAAGAAAAGAAGAAATCAAAGCGAATATATCAAACACCATCCCGTGAAGTTGGATTAAAAATTAGTCGATCACTAAAAAGTCTGAATGCAAAAACAGGGATTTTTAGTAAAAGAATGAAAATTATCCATGGTGATCCCGCTCTTCAAGCACAGAGGGTGGCTGCAATCAAAAAAGCCAAAGGAAGTGATGCAGCAAGAAAGAAAGTCTCTGACGCTCTAAAAGCTTTCTTTAGTGACCCAGAAAACCGAAGGCGGAGGAGTATAGCCATGAAAGGTGTCAAGTTTTACTGCAAAAACTGTGGAAGGGAGGGCCATAGAAGACACTACTGTCCAGAACTTGGCTCGGTCAGCCGGAAGTTCAAATGTCGGGCATGTGGCGAAAAGGGGCATAATATGAGAACTTGTAAGAAGTTGAGGATGACAGATGAAAAGCTCGAATTTAGGAAGGATAAGCATTGCAGAATATGTGGAGAAAGTGGTCACAACAGAAGGACTTGCTCGGTTTTGGTATCTAAATCTAAGTCTAAACCAAGTAATCAAAATGGTAAGGCGAAGCTTCGTAGCTGCCGAATTTGTCGTCAAATGGGTCATAATCGGCGGAAGTGTCCAACGAAGATGACGATAAATTTATCCGAAATGGATGGAAAAGCTATCGATTTGAAGTACGGGAGAAGGAACTATACTAGAGGGTTTTGTGGAGAGGAGGGACATAATGTAAGGACATGCCCTGATTGGAAAGATGAATTACTTGCAGATCAATCGACCAATCAATGA 1305 43.98 MSSLICSSFRSLVPQWRRTNVRFLIFLHSKSTISFSPRVFASLSDEDSVSMPKPAQFGYDPSAELYGLVVDTKPRNPISEVPEPRSWFGPSGQYIKELPCPNCRARGYTPCTECGIERSRVDCSLCNGKGMMTCQQCSGDRVIWEESIDERPWEKVRSNSPLRMKEDDEVDNLDIKPEEKKKSKRIYQTPSREVGLKISRSLKSLNAKTGIFSKRMKIIHGDPALQAQRVAAIKKAKGSDAARKKVSDALKAFFSDPENRRRRSIAMKGVKFYCKNCGREGHRRHYCPELGSVSRKFKCRACGEKGHNMRTCKKLRMTDEKLEFRKDKHCRICGESGHNRRTCSVLVSKSKSKPSNQNGKAKLRSCRICRQMGHNRRKCPTKMTINLSEMDGKAIDLKYGRRNYTRGFCGEEGHNVRTCPDWKDELLADQSTNQ 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21381825 21384734 - Bpe009767.1 Bpe02g01942 100091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01942 434 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 8 350 - -
Bpe02g01942 434 ProSiteProfiles Zinc finger CCHC-type profile. 330 343 IPR001878 GO:0003676|GO:0008270
Bpe02g01942 434 SUPERFAMILY Retrovirus zinc finger-like domains 351 383 IPR036875 GO:0003676|GO:0008270
Bpe02g01942 434 Gene3D - 272 322 - -
Bpe02g01942 434 Gene3D - 324 388 - -
Bpe02g01942 434 ProSiteProfiles Zinc finger CCHC-type profile. 298 314 IPR001878 GO:0003676|GO:0008270
Bpe02g01942 434 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 350 423 - -
Bpe02g01942 434 SUPERFAMILY Retrovirus zinc finger-like domains 271 315 IPR036875 GO:0003676|GO:0008270
Bpe02g01942 434 ProSiteProfiles Zinc finger CCHC-type profile. 274 289 IPR001878 GO:0003676|GO:0008270
Bpe02g01942 434 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 350 423 - -
Bpe02g01942 434 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 8 350 - -
Bpe02g01942 434 SMART c2hcfinal6 298 314 IPR001878 GO:0003676|GO:0008270
Bpe02g01942 434 SMART c2hcfinal6 365 381 IPR001878 GO:0003676|GO:0008270
Bpe02g01942 434 SMART c2hcfinal6 273 289 IPR001878 GO:0003676|GO:0008270
Bpe02g01942 434 SMART c2hcfinal6 329 345 IPR001878 GO:0003676|GO:0008270
Bpe02g01942 434 SMART c2hcfinal6 408 421 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01942 Bpe-Chr2:21381825 Bpe03g00286 Bpe-Chr3:3924281 5.41E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01942 - - csv:101211176 561.607