Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01952 ATGTTGGATACCACTGTTTCTTCTGATCCTCCATCCCCCTTTGCGTCCTTCAAAAATGGGGTGACTTGCAAAAGGAAAAGAAGACCAGCAGGAACTCCAGATCCAGACGCAGAAGTGGTTTCTCTCTCTCCAAGGACTTTGCTGGAATCAGATCGATACGTGTGTGAGATCTGCAATCAAGGGTTTCAGAGAGATCAGAATCTGCAGATGCATAGGAGGAGGCATAAGGTGCCGTGGAAGTTGTTGAAGAGGGAGACGGAGGAGGTGAAGAAGAAGGTGTTTGTTTGCCCTGAGCTGACGTGCTTGCACCACGACCCTTGCCATGCTCTCGGCGACCTCGTCGGAATCAAAAAACATTTTCGGCGTAAACACAGCAATCACAAGCAGTGGACTTGTGATAAATGCTCCAAAAGCTACGCCGTTCAATCCGATTACAAAGCCCATCTCAAAACTTGTGGCACTAGAGGCCACTCCTGCGACTGTGGCCGTGTGTTTTCCAGAGTGGAGAGTTTCATCGAGCACCAAGATGCTTGCACTGTCCGGCAGGTGCGGCCTGGGTTTCCGGTGACCCAGCCAGCCTGCACTTCCCGATCAGCTTCTAGCACTAGCCCTTCCACTGACGCAGATTTCGGCAAGGCCACAATGCCGAAGCTTCCCAGCAGGCCAACTCAATCAATATTCTTGAGATCCGATCAAATGAATTATAATTATTCTTCCTCTACGTCTGGTTTCCAAGAACATAATCTCGAACTTCAGCTCCTTCCGATGTCGCCATATCCGGACGAAATCTTTGCCACCCACCTGAAACTTTCGATCGGATCCTCAACAGAAGGTGGCGGAAAGGAAGAAATAAATAAACAGGTTTCAGAAACCCGGGAGAAAAATGACATCGTTCCTGCACTGGAAGTGATGAGGTTGAGAGAATATTCAACTGAAGATCTAAGGAAGTTAGCAATGGCTGAAATGGCTTACGCAGAAGAAGCTAGACTAGAAGCCAAACGACAGATCGAAATTGCTGAGATGGAATTCGGAAACGCAAAAAGAATAAGGCAACAAGCCATAGCCGAGCTCGAAAAAGCAGAGATTTTGAAAGAGAACGCAACGAGAAAGATGAGCTCCACCATTCTGCAAATCACTTGCCAAGCATGCAAACGACAATTCCAGCCGCCGTCAATGGCGGCGCTGGCACCGTCGGACGAGACCTCCCTGGCGATGAGCTACATGTCATCCGCCACCACCGAAGGCGAGGGAGAATGA 1257 49.24 MLDTTVSSDPPSPFASFKNGVTCKRKRRPAGTPDPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETEEVKKKVFVCPELTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWTCDKCSKSYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQVRPGFPVTQPACTSRSASSTSPSTDADFGKATMPKLPSRPTQSIFLRSDQMNYNYSSSTSGFQEHNLELQLLPMSPYPDEIFATHLKLSIGSSTEGGGKEEINKQVSETREKNDIVPALEVMRLREYSTEDLRKLAMAEMAYAEEARLEAKRQIEIAEMEFGNAKRIRQQAIAELEKAEILKENATRKMSSTILQITCQACKRQFQPPSMAALAPSDETSLAMSYMSSATTEGEGE 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21439405 21441100 - Bpe009777.2 Bpe02g01952 100101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01952 418 MobiDBLite consensus disorder prediction 1 15 - -
Bpe02g01952 418 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 7 418 - -
Bpe02g01952 418 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Bpe02g01952 418 Gene3D Classic Zinc Finger 30 97 - -
Bpe02g01952 418 Coils Coil 350 370 - -
Bpe02g01952 418 Coils Coil 322 342 - -
Bpe02g01952 418 MobiDBLite consensus disorder prediction 191 222 - -
Bpe02g01952 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Bpe02g01952 418 SUPERFAMILY beta-beta-alpha zinc fingers 52 150 IPR036236 -
Bpe02g01952 418 SMART c2h2final6 53 75 IPR013087 -
Bpe02g01952 418 SMART c2h2final6 130 157 IPR013087 -
Bpe02g01952 418 SMART c2h2final6 94 124 IPR013087 -
Bpe02g01952 418 Pfam Zinc finger, C2H2 type 53 75 IPR013087 -
Bpe02g01952 418 Pfam Zinc finger, C2H2 type 131 151 IPR013087 -
Bpe02g01952 418 MobiDBLite consensus disorder prediction 191 209 - -
Bpe02g01952 418 PANTHER OS03G0310200 PROTEIN 7 418 IPR039288 GO:0009630
Bpe02g01952 418 Gene3D Classic Zinc Finger 115 187 - -
Bpe02g01952 418 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01952 Bpe-Chr2:21439405 Bpe09g00021 Bpe-Chr9:171971 6.84E-77 dispersed
Bpe07g01079 Bpe-Chr7:16162999 Bpe02g01952 Bpe-Chr2:21439405 1.13E-39 dispersed
Bpe02g01952 Bpe-Chr2:21439405 Bpe12g00644 Bpe-Chr12:12088773 8.33E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21014 PF00096 zf-C2H2 0.0039 CL0361 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01952 K25871 - pop:7471448 578.556