Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe02g01952 | ATGTTGGATACCACTGTTTCTTCTGATCCTCCATCCCCCTTTGCGTCCTTCAAAAATGGGGTGACTTGCAAAAGGAAAAGAAGACCAGCAGGAACTCCAGATCCAGACGCAGAAGTGGTTTCTCTCTCTCCAAGGACTTTGCTGGAATCAGATCGATACGTGTGTGAGATCTGCAATCAAGGGTTTCAGAGAGATCAGAATCTGCAGATGCATAGGAGGAGGCATAAGGTGCCGTGGAAGTTGTTGAAGAGGGAGACGGAGGAGGTGAAGAAGAAGGTGTTTGTTTGCCCTGAGCTGACGTGCTTGCACCACGACCCTTGCCATGCTCTCGGCGACCTCGTCGGAATCAAAAAACATTTTCGGCGTAAACACAGCAATCACAAGCAGTGGACTTGTGATAAATGCTCCAAAAGCTACGCCGTTCAATCCGATTACAAAGCCCATCTCAAAACTTGTGGCACTAGAGGCCACTCCTGCGACTGTGGCCGTGTGTTTTCCAGAGTGGAGAGTTTCATCGAGCACCAAGATGCTTGCACTGTCCGGCAGGTGCGGCCTGGGTTTCCGGTGACCCAGCCAGCCTGCACTTCCCGATCAGCTTCTAGCACTAGCCCTTCCACTGACGCAGATTTCGGCAAGGCCACAATGCCGAAGCTTCCCAGCAGGCCAACTCAATCAATATTCTTGAGATCCGATCAAATGAATTATAATTATTCTTCCTCTACGTCTGGTTTCCAAGAACATAATCTCGAACTTCAGCTCCTTCCGATGTCGCCATATCCGGACGAAATCTTTGCCACCCACCTGAAACTTTCGATCGGATCCTCAACAGAAGGTGGCGGAAAGGAAGAAATAAATAAACAGGTTTCAGAAACCCGGGAGAAAAATGACATCGTTCCTGCACTGGAAGTGATGAGGTTGAGAGAATATTCAACTGAAGATCTAAGGAAGTTAGCAATGGCTGAAATGGCTTACGCAGAAGAAGCTAGACTAGAAGCCAAACGACAGATCGAAATTGCTGAGATGGAATTCGGAAACGCAAAAAGAATAAGGCAACAAGCCATAGCCGAGCTCGAAAAAGCAGAGATTTTGAAAGAGAACGCAACGAGAAAGATGAGCTCCACCATTCTGCAAATCACTTGCCAAGCATGCAAACGACAATTCCAGCCGCCGTCAATGGCGGCGCTGGCACCGTCGGACGAGACCTCCCTGGCGATGAGCTACATGTCATCCGCCACCACCGAAGGCGAGGGAGAATGA | 1257 | 49.24 | MLDTTVSSDPPSPFASFKNGVTCKRKRRPAGTPDPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETEEVKKKVFVCPELTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWTCDKCSKSYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQVRPGFPVTQPACTSRSASSTSPSTDADFGKATMPKLPSRPTQSIFLRSDQMNYNYSSSTSGFQEHNLELQLLPMSPYPDEIFATHLKLSIGSSTEGGGKEEINKQVSETREKNDIVPALEVMRLREYSTEDLRKLAMAEMAYAEEARLEAKRQIEIAEMEFGNAKRIRQQAIAELEKAEILKENATRKMSSTILQITCQACKRQFQPPSMAALAPSDETSLAMSYMSSATTEGEGE | 418 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 21439405 | 21441100 | - | Bpe009777.2 | Bpe02g01952 | 100101 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe02g01952 | 418 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Bpe02g01952 | 418 | PANTHER | ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 | 7 | 418 | - | - | |
Bpe02g01952 | 418 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 55 | 75 | IPR013087 | - | |
Bpe02g01952 | 418 | Gene3D | Classic Zinc Finger | 30 | 97 | - | - | |
Bpe02g01952 | 418 | Coils | Coil | 350 | 370 | - | - | |
Bpe02g01952 | 418 | Coils | Coil | 322 | 342 | - | - | |
Bpe02g01952 | 418 | MobiDBLite | consensus disorder prediction | 191 | 222 | - | - | |
Bpe02g01952 | 418 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 53 | 75 | IPR013087 | - | |
Bpe02g01952 | 418 | SUPERFAMILY | beta-beta-alpha zinc fingers | 52 | 150 | IPR036236 | - | |
Bpe02g01952 | 418 | SMART | c2h2final6 | 53 | 75 | IPR013087 | - | |
Bpe02g01952 | 418 | SMART | c2h2final6 | 130 | 157 | IPR013087 | - | |
Bpe02g01952 | 418 | SMART | c2h2final6 | 94 | 124 | IPR013087 | - | |
Bpe02g01952 | 418 | Pfam | Zinc finger, C2H2 type | 53 | 75 | IPR013087 | - | |
Bpe02g01952 | 418 | Pfam | Zinc finger, C2H2 type | 131 | 151 | IPR013087 | - | |
Bpe02g01952 | 418 | MobiDBLite | consensus disorder prediction | 191 | 209 | - | - | |
Bpe02g01952 | 418 | PANTHER | OS03G0310200 PROTEIN | 7 | 418 | IPR039288 | GO:0009630 | |
Bpe02g01952 | 418 | Gene3D | Classic Zinc Finger | 115 | 187 | - | - | |
Bpe02g01952 | 418 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe02g01952 | Bpe-Chr2:21439405 | Bpe09g00021 | Bpe-Chr9:171971 | 6.84E-77 | dispersed | |
Bpe07g01079 | Bpe-Chr7:16162999 | Bpe02g01952 | Bpe-Chr2:21439405 | 1.13E-39 | dispersed | |
Bpe02g01952 | Bpe-Chr2:21439405 | Bpe12g00644 | Bpe-Chr12:12088773 | 8.33E-175 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21014 | PF00096 | zf-C2H2 | 0.0039 | CL0361 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe02g01952 | K25871 | - | pop:7471448 | 578.556 |