Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01970 ATGGCAACTGTACAGAGAGTAGCGCAGTCCAGTGTGAGCGCCAGTCCTATAAATTGTGGCTTAAGTAAAGCAAGTACTGGGGGTGGCGACGACGCGGTTGTTTCAGATCAATTTCCGGAGGGATTAAGGGTTCTTGTCGTAGATGATGACACTACCTGCTTGAGAATTCTTGAGCAGATGCTACGCCGGTGTTTATATCATGTGACCACATGTTCCCAAGCATCGGTTGCTCTGAACCTTCTGCGTGAGAAGAAAGGTTGTTTTGATGTGGTATTGAGTGATGTTCATATGCCTGATATGGATGGATACAAGCTCCTTGAGTATGTTGGACTAGAAATGGACCTTCCAGTCATAATGATGTCTGCTGATAAGAGAACGAGTGCGGTCATGAAAGGAATCAGACATGGGGCTTGTGATTATTTAATTAAGCCCATCTGGTATGAGGAACTCAAGAATATCTGGCAGCATGTTGTTAGAAAAAAGTGGAATGAATATAAGGAACTTGAAAATTCAAGAAGTTTGGAAGATAGTGATAGGCAAAAACGAAGGACTGATGACACAGAATATGCGTGTTCTACTCATGAAGGCGAAGAAGGAATTACACAAACTACTAAAAGAAGGAGCAGTACCAAAGAAGAAGACAGCGAACTGGAAAATGATGATCCGTCAGTCTCAAAGAAGCCACGAGTAGTGTGGTCTGTAGAGCTGCACCAACAATTCGTCAGTGCCGTGAACCAACTCGGACTTGATAAGGCTGTGCCAAAAAGAATTCTTGAACTGATGAATGTACCTAGTTTAACAAGAGAAAACGTTGCCAGTCATCTGCAGAAATTTAGACTATATTTAAAGAGGTTAAGTGGAGTAGCTCAACAACAAACTTTTCCAAATATTTATCGTACCCCTTTCGAACAAAATGTTAAATTGGACTCACTTGGAGTTGAAGCACTGGGAGTCGCTGGTCAAATTCCTCCACAAACTCTAGCAGCCATGCAAGCTGAACTATTTGGCCGACCAATGGGTAACCTATTACCACCTATGGACCAGGCAGCTGTTTTGCAAGCATCGACACAGGGACCCAAGCTGACGACAATTGAGCAGAATCCAATCAATCCATTCAGTCGGACTTTGGTCAAACACCAAACTAGTGATTCCAAATCTTACCTACGGTCCATTATATCTGTTGACGATGTTACTTCAGGATATAGTGGTGCATGGCCATCGAATAGCCTAAGCGTTGCAGGGCCAAACAATCTTGTTAGGATGAGTTCTCAGGATAGTAACATGTTGGTTGGTATAATGCAGGAGCAACAACAGCATAAACAATATCTGGAATGGCAACAGCAGCAAAAGCAACGTCCACAGCATCAACAGGACCTGATATTGTCAGAATCCAGCAGCTCAATGAATGTGCAGCCATCTTGCCTCGTTTTGCCCTCACAGCCATCGCTCAATTTGCTCCCCGAAAGTAGTCCTGATTCTGCCAAACAGAATCACAACATTAATAGGGGTACTATTATTGATTACAGCCTCGCCTCGCCTCAACACAATAGTTCGATATCAAATTTTAACCAGATATCGCATGGGGATCAAAAACCTCTTAATACAATTAGTGCCATTGGGTACTCAGCCCAACTGTTGGGTTCTCCTAAATCATCTTATTCTGTTACTGATGCCAATAACTATGTGGGTCAAGTACATACCTCCATAGTGACATTTACTGCTGGGAGTCAATTGTCAGGTGTTGTCAGAAAGAGTGATAAGCAGGGTTCTTATGGCTCAAAATCAGAAGAAATACTTGATCATGACCATCTTAGGAACCTTATATTTGTTGGTAAAGAGACTTCTTTTCAAAGTCCATCTTCAGATAAAAACATTGTTTTGCCAATGACTGATAAACAAATACAACATAGGAAAAAATATTTATAA 1926 41.9 MATVQRVAQSSVSASPINCGLSKASTGGGDDAVVSDQFPEGLRVLVVDDDTTCLRILEQMLRRCLYHVTTCSQASVALNLLREKKGCFDVVLSDVHMPDMDGYKLLEYVGLEMDLPVIMMSADKRTSAVMKGIRHGACDYLIKPIWYEELKNIWQHVVRKKWNEYKELENSRSLEDSDRQKRRTDDTEYACSTHEGEEGITQTTKRRSSTKEEDSELENDDPSVSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPSLTRENVASHLQKFRLYLKRLSGVAQQQTFPNIYRTPFEQNVKLDSLGVEALGVAGQIPPQTLAAMQAELFGRPMGNLLPPMDQAAVLQASTQGPKLTTIEQNPINPFSRTLVKHQTSDSKSYLRSIISVDDVTSGYSGAWPSNSLSVAGPNNLVRMSSQDSNMLVGIMQEQQQHKQYLEWQQQQKQRPQHQQDLILSESSSSMNVQPSCLVLPSQPSLNLLPESSPDSAKQNHNINRGTIIDYSLASPQHNSSISNFNQISHGDQKPLNTISAIGYSAQLLGSPKSSYSVTDANNYVGQVHTSIVTFTAGSQLSGVVRKSDKQGSYGSKSEEILDHDHLRNLIFVGKETSFQSPSSDKNIVLPMTDKQIQHRKKYL 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21547512 21552411 - Bpe009793.1 Bpe02g01970 100119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01970 641 SUPERFAMILY CheY-like 40 166 IPR011006 -
Bpe02g01970 641 PIRSF RR_ARR_type-B 22 639 IPR017053 GO:0003677|GO:0003700|GO:0009736
Bpe02g01970 641 CDD REC_typeB_ARR-like 44 158 - -
Bpe02g01970 641 Pfam Myb-like DNA-binding domain 229 277 IPR001005 -
Bpe02g01970 641 Pfam Response regulator receiver domain 44 152 IPR001789 GO:0000160
Bpe02g01970 641 SUPERFAMILY Homeodomain-like 225 284 IPR009057 -
Bpe02g01970 641 SMART REC_2 42 154 IPR001789 GO:0000160
Bpe02g01970 641 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 579 IPR045279 GO:0009736
Bpe02g01970 641 MobiDBLite consensus disorder prediction 169 224 - -
Bpe02g01970 641 Gene3D - 223 286 - -
Bpe02g01970 641 Gene3D - 42 181 - -
Bpe02g01970 641 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 227 280 IPR006447 GO:0003677
Bpe02g01970 641 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR24 28 579 - -
Bpe02g01970 641 ProSiteProfiles Response regulatory domain profile. 43 158 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01970 Bpe-Chr2:21547512 Bpe05g00823 Bpe-Chr5:21502106 7.84E-124 dispersed
Bpe07g00639 Bpe-Chr7:13122506 Bpe02g01970 Bpe-Chr2:21547512 8.47E-19 dispersed
Bpe08g00093 Bpe-Chr8:515257 Bpe02g01970 Bpe-Chr2:21547512 8.33E-25 dispersed
Bpe13g01498 Bpe-Chr13:20363692 Bpe02g01970 Bpe-Chr2:21547512 4.31E-94 transposed
Bpe14g00722 Bpe-Chr14:5610147 Bpe02g01970 Bpe-Chr2:21547512 2.13E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21015 PF00072 Response_reg 4.80E-22 CL0304 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01970 - K14491 vvi:100250832 677.167