Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01976 ATGGGTGACATGAAAGATAAGGTCAAGGGATTCATGAAAAAGGTTAACGATCAGTTCTCGTCGTCTTCTTCTGGGAAATTCAAAGGGCAAGGTCGAGTTTTAGGCTCGTCTTCATCCGAATCCGCTAATCCTGTTTATTACCGATCGGAGCAGAATCTCAATTCGAAGCCTACTAATCCTGCTCCTCCCGTGAGTTCTAAACCTTCGTCTGAAAAACCTCTTATTCCCACTAAGAATAAACCATTATTAGCGAATAACTCGAATTCAGATCTTAAGCCGATTAATGGGTTTGACCCATTTGACTCATTGATCACTTCTGGGAAGCGATCACAAAATGGGTATTCGATTGATGTGTATGAATGTCCCATTTGTGGGAAATCTTACAGGTCTGAAGAAGAAGTGTCTATGCATGTGGATAGCTGTGTCGATAATTCAGTTGAAAATAACGGGGAAAGTGGAGCTTTTGGATTGCCCAATAACGAGGCTGAGGCTTGCGTTGCTAATTTCTTATCAGCGAAGCCGACAGAAGGCTCCATTGAAGTTCTTTTGAAGCTTGTGAGAAACATAGTGAGGGAGCCAGAGAATTCAAAGTTTAGGAGGATTAGGATGAGTAATCCGAAGATTCGAGAGGCAGTTGGTGATGTCGTAGGTGGGATTGAATTGTTGGAATTAGTCGGGTTTGAACTGAGAGAGGAGGATGGCGAGATGTTGGCTGCTATGGAGGTTCCAACTGAAGAAAGAATGAGATTAATAAATGAAGTAATAGCTTTACTTGAACGTCCAATGCCAGAATCACAACAGAAGAAACCTGACCCGCCATCCGTGGCTGCAACTCCTGCTGATGAACTGATTCAGCCGAAAAAGGTTGACAGGCAGACACGAGTATTCTTCTCCGTCCCGGAAAGTGTAGCAGCGAAAATAGAGATACCTGATTCATTCTATAACCTCTCACTTCAAGAGCTGAAAAGAGAGGCCGATTTGAGGAAGAAAAAGATGGAGTCGTCCCAACTTTTGATCCCCAAATCATACAAGGAAAAGCAGGCAAACGCAGTTCGAAGAAGATACAAAAAAGCTATGATTAGGATTCAGTTTCCTGATGGAGTGGTTCTCCAAGGCGTCTTTGCTCCTTGGGAGTCAACTACTGCCTTGTATGAGTTTGTAACGTCTGCACTGAAAGAACCCGGCCTGGAGTTTGAGCTGTTACATCCTGTTGTTGTCAGACGCAGAGTTATCCCTCGATGCCCCGTCGGAGAGAGCGAGAAGGTGATTACTTTAGAAGAAGAGGATTTGGTCCCATCGGCTCTTATCAAGTTCAGACCAATCGAGACAGAATCCGTCGTCTTCACTGGTTTATGCAACGACCTCCTAGAAATGATCGAACCGGTCCCAAATGGCTCTGCATAA 1404 44.3 MGDMKDKVKGFMKKVNDQFSSSSSGKFKGQGRVLGSSSSESANPVYYRSEQNLNSKPTNPAPPVSSKPSSEKPLIPTKNKPLLANNSNSDLKPINGFDPFDSLITSGKRSQNGYSIDVYECPICGKSYRSEEEVSMHVDSCVDNSVENNGESGAFGLPNNEAEACVANFLSAKPTEGSIEVLLKLVRNIVREPENSKFRRIRMSNPKIREAVGDVVGGIELLELVGFELREEDGEMLAAMEVPTEERMRLINEVIALLERPMPESQQKKPDPPSVAATPADELIQPKKVDRQTRVFFSVPESVAAKIEIPDSFYNLSLQELKREADLRKKKMESSQLLIPKSYKEKQANAVRRRYKKAMIRIQFPDGVVLQGVFAPWESTTALYEFVTSALKEPGLEFELLHPVVVRRRVIPRCPVGESEKVITLEEEDLVPSALIKFRPIETESVVFTGLCNDLLEMIEPVPNGSA 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21600762 21603325 + Bpe009800.1 Bpe02g01976 100125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01976 467 ProSiteProfiles UBX domain profile. 353 438 IPR001012 GO:0005515
Bpe02g01976 467 MobiDBLite consensus disorder prediction 15 60 - -
Bpe02g01976 467 CDD PUB 164 260 - -
Bpe02g01976 467 MobiDBLite consensus disorder prediction 1 90 - -
Bpe02g01976 467 SUPERFAMILY PUG domain-like 172 260 IPR036339 -
Bpe02g01976 467 Pfam PUB domain 175 246 IPR018997 -
Bpe02g01976 467 Gene3D - 347 440 - -
Bpe02g01976 467 Gene3D - 168 259 - -
Bpe02g01976 467 SMART PGNneu 177 244 - -
Bpe02g01976 467 Pfam UBX domain 355 434 IPR001012 GO:0005515
Bpe02g01976 467 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 464 - -
Bpe02g01976 467 SUPERFAMILY Ubiquitin-like 328 438 IPR029071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01517 Bpe-Chr2:18365189 Bpe02g01976 Bpe-Chr2:21600762 5.33E-08 dispersed
Bpe02g01976 Bpe-Chr2:21600762 Bpe13g00860 Bpe-Chr13:14771340 8.23E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21017 PF00789 UBX 2.20E-05 CL0072 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01976 K14011 - jre:109003978 605.52