Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g01981 ATGGCGGTTTTACCTTCGAGCTCTTCGATTTTGGAGCTATCAATATCTATTCCTGGATTTTCTTCATATCCACCCTCATCCGTGAGAGATTTGGACATAAATCAGGTACCGGCGGATGAAGACTGGATGACTGCGAGCATGGAAGACGAGGAAGAAAGCTTGAACGAAGGCCCTCCACGTAAAAAGCTTCGTCTCACCATAGAACAGTCTCGTCGTCTTGAGGAAAGCTTCAGACAAAACCATACCTTAAATCCTAAGCAGAAAGAGATTCTGGCTATGGAGTTGAAGCTCAGGCCTCGTCAAGTAGAGGTTTGGTTTCAGAACAGAAGGGCCAGGAGCAAACTGAAGCAAACGGAGATGGAATGCGAGTACTTAAAGAGATGGTTTGGTGCATTGACTGAGCAGAACAGGTTGCTAAAAAGGGAAGTAGAAGAATTGAGGGCAATGAAGGTAAGCCCTCCGACTGTAATCTCCCCACACTCGTGCGAGCCACTCCCAGCCTCAACTCTAACCATGTGTCCACGGTGCGAACGTGTGTCGGCTATGTCCGTCGACATGGCTCCTACAAAATCCAGTATCACCTCACGACCATCACCAGCCGCTTGCTAA 609 48.28 MAVLPSSSSILELSISIPGFSSYPPSSVRDLDINQVPADEDWMTASMEDEEESLNEGPPRKKLRLTIEQSRRLEESFRQNHTLNPKQKEILAMELKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGALTEQNRLLKREVEELRAMKVSPPTVISPHSCEPLPASTLTMCPRCERVSAMSVDMAPTKSSITSRPSPAAC 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21620980 21623118 + Bpe009805.1 Bpe02g01981 100130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g01981 202 SUPERFAMILY Homeodomain-like 46 117 IPR009057 -
Bpe02g01981 202 PANTHER - 1 187 - -
Bpe02g01981 202 Pfam Homeodomain 60 114 IPR001356 GO:0003677
Bpe02g01981 202 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 187 - -
Bpe02g01981 202 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Bpe02g01981 202 SMART HOX_1 58 120 IPR001356 GO:0003677
Bpe02g01981 202 Pfam Homeobox associated leucine zipper 116 150 IPR003106 GO:0006355|GO:0043565
Bpe02g01981 202 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Bpe02g01981 202 SMART halz 116 159 IPR003106 GO:0006355|GO:0043565
Bpe02g01981 202 Gene3D - 52 123 - -
Bpe02g01981 202 Coils Coil 129 149 - -
Bpe02g01981 202 CDD homeodomain 59 117 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01981 Bpe-Chr2:21620980 Bpe04g01452 Bpe-Chr4:21149666 5.99E-47 dispersed
Bpe02g01981 Bpe-Chr2:21620980 Bpe06g00652 Bpe-Chr6:17223437 4.33E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21018 PF00046 Homeodomain 3.90E-16 CL0123 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g01981 K09338 - tcc:18609772 317.39