Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02008 ATGCACAAGGAAACCTACGCGGCGTCTCATGGCGGTCTCACTACCTCTACCATAACCACCATGTCATCGTCGTTCCTTAAGTCGCCCTTTGAACCAAGAGATGTCGTGTATGGTCCCCTGCACTCGCCTATGTTCCAAGAGAAACAATCTCTTCCTAGCTCTATCTCCTTTACTCCGAATCGAATCTCAGACTCTAAATCACCATCGGCTTCAGCTTTAAGCAAACACATCTATCACACGCGTGCAGTCCAAGAGCACCAGGAAATGGTCAATCGTCACAGTCTTTGCCTAACTCATCTCCGCGAAGCCACCGAAGAGGCGGAGTATCTTCGCCACGAGAACACCCAACTCCGCAGTGTTAACCGCGAGCTCAACAAGCATCTGAGCATCCTGATCCACGACAAGGTCCAGCCGCAATTCGTTTCTCCTGACTACTCGATACCGTATGACATTGTCGACGGATTCCATGGACTTCATATTGGGGCCAAGGAGGGGAGTAGTTCTACGTGGGACAATGTTTCGGATGAGAGCCCCACGAGTGTGATGGAGAACGGAAGAATCGAGAACGTTGAGGTAGAGAGATTTTCGCTGCCGAAGAGTATATCCGTGAGGTCTAATGGATACTTAAACTTGAAGATGAGTCAAAATAATTCCAACAATGGCGGACGGATTCGCCCATCAACTATGCCAAGAACGACGAGTCCAATCAAGCAAAAGGTGTTCGTGCCGGTGGGTAAGAAAGAGGAAGAGGCACTTGAACTGGAGGTTTACAACCAAGGAATGTTCAAGACCGAACTCTGCAACAAATGGCAGGAAACTGGCGCTTGCCCGTATGGAGATCAGTGCCAGTTTGCTCATGGCATTGAGGAGCTCCGCCCTGTCATCCGTCACCCCCGCTACAAGACGGAGGTCTGCAGGATGGTTCTCTCTGGGGTAGTCTGTCCTTATGGTCATCGATGCCACTTCCGCCATGCACTGACTGATCAGGAGAGGCTTATGGGTGCCTTCAATCCCCCCACATCCATTCTTGAAATTGAATTTGAAGAACATTAG 1053 50.05 MHKETYAASHGGLTTSTITTMSSSFLKSPFEPRDVVYGPLHSPMFQEKQSLPSSISFTPNRISDSKSPSASALSKHIYHTRAVQEHQEMVNRHSLCLTHLREATEEAEYLRHENTQLRSVNRELNKHLSILIHDKVQPQFVSPDYSIPYDIVDGFHGLHIGAKEGSSSTWDNVSDESPTSVMENGRIENVEVERFSLPKSISVRSNGYLNLKMSQNNSNNGGRIRPSTMPRTTSPIKQKVFVPVGKKEEEALELEVYNQGMFKTELCNKWQETGACPYGDQCQFAHGIEELRPVIRHPRYKTEVCRMVLSGVVCPYGHRCHFRHALTDQERLMGAFNPPTSILEIEFEEH 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21753868 21755825 + Bpe009831.1 Bpe02g02008 100157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02008 350 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 48 336 - -
Bpe02g02008 350 Gene3D - 255 294 - -
Bpe02g02008 350 Gene3D - 295 331 - -
Bpe02g02008 350 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Bpe02g02008 350 SMART c3hfinal6 261 288 IPR000571 GO:0046872
Bpe02g02008 350 Coils Coil 100 120 - -
Bpe02g02008 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 287 IPR000571 GO:0046872
Bpe02g02008 350 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Bpe02g02008 350 SUPERFAMILY CCCH zinc finger 258 293 IPR036855 GO:0046872
Bpe02g02008 350 SUPERFAMILY CCCH zinc finger 295 329 IPR036855 GO:0046872
Bpe02g02008 350 PANTHER CCCH ZINC FINGER/TIS11-RELATED 48 336 IPR045877 GO:0003729
Bpe02g02008 350 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02008 Bpe-Chr2:21753868 Bpe11g00015 Bpe-Chr11:105212 1.44E-77 dispersed
Bpe13g01048 Bpe-Chr13:16143718 Bpe02g02008 Bpe-Chr2:21753868 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21020 PF00642 zf-CCCH 6.60E-13 CL0537 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02008 K18753 - csv:101203274 432.18