Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02027 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAGAGACACTGGGGCTCATGGGTATCAGAAATTCGCCATCCTTTGCTGAAAAGAAGGGTCTGGCTAGGAACTTTCGAGACTGCAGAAGAAGCAGCCAGAGCTTACGATCAAGCAGCAATTTTGATGAGTGGAAGAAACGCGAAAACGAATTTTCCAGTCTCTCAAGCTCCGACCAGCGACTCAGAAAAAAACAAGCTTTCTCCGTTATCACCCAAGAGTTTGTCAGAAATTCTCCATGCAAAGCTGAGAAAATGCAGCAAAACACCTTCTCCTTCAATGACTTGTCTGAGGTTAGACAACGAAAATTCTCATATCGGAGTTTGGCAAAAGCGAGCTGGGCAGAGTTCGAGCTCAAACTCCAGTTGGGTTATGACCGTCGAGCTCGGAAAGAAGAACCCTGAACAGAATTCTTCGTCTTCTGACCAGCTTCCGGCATTGGAGGCTATCCCCGAGCTTGCGCTAGAGATGAGTGCAGACGAAAGAGTTGCTTTGCAAATGATCGAGGAATTGCTCATTGGAAACAATCCAAGCCCTTCAATTAAGCGTCGCGAAGAAGACACAGTTCCTGATTTCTACATTTGA 615 46.34 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVSQAPTSDSEKNKLSPLSPKSLSEILHAKLRKCSKTPSPSMTCLRLDNENSHIGVWQKRAGQSSSSNSSWVMTVELGKKNPEQNSSSSDQLPALEAIPELALEMSADERVALQMIEELLIGNNPSPSIKRREEDTVPDFYI 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21876454 21877177 + Bpe009849.1 Bpe02g02027 100176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02027 204 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bpe02g02027 204 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 193 - -
Bpe02g02027 204 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Bpe02g02027 204 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Bpe02g02027 204 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Bpe02g02027 204 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bpe02g02027 204 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 193 - -
Bpe02g02027 204 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Bpe02g02027 204 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Bpe02g02027 204 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g02027 Bpe13g01056 CCT
Bpe02g02027 Bpe13g01056 ECH
Bpe01g00775 Bpe02g02027 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00775 Bpe-Chr1:7912872 Bpe02g02027 Bpe-Chr2:21876454 4.20E-79 dispersed
Bpe02g01256 Bpe-Chr2:16047004 Bpe02g02027 Bpe-Chr2:21876454 6.47E-31 dispersed
Bpe02g02027 Bpe-Chr2:21876454 Bpe04g00054 Bpe-Chr4:470637 2.69E-72 dispersed
Bpe13g01056 Bpe-Chr13:16205097 Bpe02g02027 Bpe-Chr2:21876454 1.06E-116 wgd
Bpe02g00563 Bpe-Chr2:3632254 Bpe02g02027 Bpe-Chr2:21876454 1.55E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21021 PF00847 AP2 7.70E-13 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02027 - - qsu:112002896 272.322