Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02071 ATGCCAAAGTTCTTGATGAAGACTGATAAATTTTGGCGCATAGGGATGGGAGAAGTGAAAATTTTTCCTGGGCCTCGACATCGCCCTCCTACAAAAAGACCTCTATGGATTATCATGTTGGTTTCCATGGTCTGTGTGTTCCTAATTTGTGCCTACATCTATCCACTCGTTAACGGTGGAGCCTGTTATATACTTTCATCTAAAGGTTGTAATGTTATTACCAACTGGCTTCCTCCTGCTCCTGCAAGAGAATATACTGATGAAGAGATTGCATCCCGTATTGTTTTTAAGGAGATTTTGAATACACCTTCTGTCCGTTCCAAAACTCCTAAAATTGCTTTCATGTTTTTGACTCCTGGTTCCCTGCCATTTGAGAAGTTGTGGGATAAGTTCTTAACGGGTAATGAAGACAGATTCTCCATTTATGTACATGCATCTAAGGAGAAACCTGTGCACTGGAGCCCTCATTTCTTGAATAGAGATATTCGTAGTGACCAGGTAATTTGGGGTAAAATTTCTATGGTTGATGCTGAAAGGCGATTGTTGGCAACTGCACTCCAAGATCCCGATAACCATCACTTTGTTTTACTTTCTGATAGTTGTGTACCACTGCATAGTTTTGACTACATCTATCAGTATCTAATGTATACGAACATCAGCTATGTTGACTGCTTTGATGATCCTGGCCCACACGGGAATGGAAGGTACTCTGAGCACATGTTACCTGAAATTGAGATGAAACATTTTAGAAAAGGTGCACAGTGGTTCTCATTGAAACGGCAGCATGCTTTAATAGTTCTGGCTGACAATCTTTACTACTCGAAATTCCGGGACTACTGCCAGCCGGGTCTGGACGGAAGGAATTGTATCGCTGATGAACATTACTTGCCAACCTTTTTCAACATGATTGACCCTGGAGGGATCGCAAATTGGTCTGTAACTCATGTAGATTGGTCAGAAAAAAAGTGGCATCCAAAATCATATGGGGCTGAGGATATTACTAGCGAGCTTCTGATGAATATTACTTCGATTGATGTTAGCGTGCATGTGACAAGTGATGAAGAGAGCAAAGTCCTGATGTGGCCTTGTTTATGGAACGGTCAACAGCGACCTTGTTACTTATTTGCAAGGAAATTCTACCCCGACGCACTCGACAACTTGTTGTCTCTTTTCTCCAACTATTCAACAATTTGA 1194 41.54 MPKFLMKTDKFWRIGMGEVKIFPGPRHRPPTKRPLWIIMLVSMVCVFLICAYIYPLVNGGACYILSSKGCNVITNWLPPAPAREYTDEEIASRIVFKEILNTPSVRSKTPKIAFMFLTPGSLPFEKLWDKFLTGNEDRFSIYVHASKEKPVHWSPHFLNRDIRSDQVIWGKISMVDAERRLLATALQDPDNHHFVLLSDSCVPLHSFDYIYQYLMYTNISYVDCFDDPGPHGNGRYSEHMLPEIEMKHFRKGAQWFSLKRQHALIVLADNLYYSKFRDYCQPGLDGRNCIADEHYLPTFFNMIDPGGIANWSVTHVDWSEKKWHPKSYGAEDITSELLMNITSIDVSVHVTSDEESKVLMWPCLWNGQQRPCYLFARKFYPDALDNLLSLFSNYSTI 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22228090 22232131 - Bpe009892.1 Bpe02g02071 100220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02071 397 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 6 396 - -
Bpe02g02071 397 Pfam Core-2/I-Branching enzyme 112 341 IPR003406 GO:0016020|GO:0016757
Bpe02g02071 397 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 6 396 IPR044174 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02071 - - - jre:109015488 680.633
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g02071 Bpe13g01106 CCT
Bpe02g02071 Bpe13g01106 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01222 Bpe-Chr2:15858237 Bpe02g02071 Bpe-Chr2:22228090 0 dispersed
Bpe02g02071 Bpe-Chr2:22228090 Bpe04g00134 Bpe-Chr4:900053 5.31E-75 dispersed
Bpe14g00749 Bpe-Chr14:5760023 Bpe02g02071 Bpe-Chr2:22228090 1.57E-56 dispersed
Bpe13g01106 Bpe-Chr13:16631536 Bpe02g02071 Bpe-Chr2:22228090 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g338 Blo01g00507 . Bda01g02064 Bda11g00105 Bpe13g01106 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0819 Cone6ag0432 . . . . . . . . Bda11g00105 . Bpe02g02071 Bma01g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000821 3 8 2 2 3 2 4 2 2 2 2 2 4 3 3 4 2 5 5 2 3 3 2 2 3 2 2 6 4 2 91