Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02080 ATGGAGTGGGACAGCAACTCGGATTTAAGCGGAGACGAGGACGAGGATGGGTTCATGCTTAATGATGCCGGTCCTCTCCCTTTTCCCGTCGAGAATTTGCTGCAAACGGCGCCCTGTGGGTTCGTCGTCACCGACTACGCGGAGCCTGACCATCCCATCATATATGTCAACACAGTTTTTGAGATGGTCACGGGCTATAGAGCTGAGGAAGTGCTGGGTCGCAACTGGCAAGTTGGAAAGGAGAAACAGTTATTTGCTAGTTATCAAGTAGTTTCTTTTTTGTTGGTTTTTATTAATTTGTTATATAATCTGTTGTGTTCATATATTTCCACTTTTCTGACTGTGATTATTTTATATTTTTGCAGCCGATTCTTGCAATGTAGGGGTCCATTTGCAAAAAGAAGGCATCCATTGGTGGACTCTTCCGTTGTTTCAAAGATTACTAAATGTCTCGAGAAGGGCATTGAATTCCAAGGCGAGTTATTGAACTTCAGGAAAGATGGATCCCCATTGATGAATAAACTTCGGCTGAACCCAATCTATGGAGATGATGACATTATAACTCATGTGATTGGAATCCAGTTGTTTACTGAAGCAGATATTGATTTAGGCCCCGTCTCTGGTTCTGCTACTAAGGAAACGGCAAAATCTTCAGATAAATTTCGTTCAAGTCTCTCATCTTTCCGCTCTGCCACCAATGGGGACCGAAATGTCTTCAGGGGTGTCTGTGGAATATTTCAGTTAAGCGACGAAGTACTTTCCCTTAAAATACTTTCACTATTGACACCCAGAGATATTGCGTCCGTTGGATCCGTCTGCAAACGATTTTACGAATTGATAGAGAACGAAGATTTGTGGAGAATGGTCTGCCAAAATGCATGGGGCAGCGAAACGACACGTGTTTTGGAGTCTGTTCCTGGTGCGAAGATGCTCGGGTGGGGACGCCTAGCCAGAGAATTGACAACTCTAGAAGCTGCAGCTTGGAGGAAGCTGACCGTTGGAGGCTCTGTCGAACCCTCACGATGCAACTTCAGTGCATGTGCAGTTGGTAATCGAGTTGTCCTCTTTGGCGGAGAAGGGGTTAATATGCAGCCGATGAACGACACATTCGTACTTGATTTGAATGCCCGTAATCCCGAGTGGCAACATGTTCAAGTGAGTTCTCCTCCGCCTGGTCGGTGGGGTCATACCCTTTCGTGTGTAAATGGGTCCCATTTGGTGGTCTTTGGTGGCTGTGGAAGGCAGGGATTACTGAATGATGTTTTCTTACTGGATTTGGACGCCAAGACTCCAACTTGGCGTGAAATTTCCGGCCTAGCTCCTCCACTCCCAAGATCATGGCATAGCTCTTGCACCCTCGATGGCACCAAGTTGATAGTTTCTGGCGGATGTGCTGATTCCGGGGTTCTTCTCAGTGATACTTTTCTCCTTGATCTCTCGATGGAGAAACCCATTTGGAGAGAGATTCCCGTGGCGTGGACCCCCCCTTCTCGATTGGGCCACACTCTATCAGTCTACGGTGGTAGAAAAATTTTAATGTTTGGAGGGTTGGCCAAAAGTGGGCCCCTTCGGTTTCGATCGAGCGATGTTTTCACTATTGATCTCAGTGAAGATGAGCCTTGTTGGAGATGTGTAACTGGTAGTGGAATGCCGGGTGCGGGAAATCCCGGGGGAATTGCACCACCTCCTAGGCTTGATCATGTGGCTGTGAGCCTTCCAGGTGGGAGAATCCTGATTTTTGGCGGGTCGGTAGCTGGTCTTCACTCAGCATCACAGCTGTATCTCCTCGATCCGACGGAGGAGAAACCTACATGGAGGATACTAAAAGTTCCTGGGCGACCTCCGAGATTCGCATGGGGACATAGTACTTGCGTAGTAGGCGGGACCAGGGCGATTGTTCTTGGTGGGCAAACTGGAGAAGAATGGACTTTAAGTGAGATTCATGAGCTATCACTAGCAAGCTCTGTTGTCTGA 1974 47.62 MEWDSNSDLSGDEDEDGFMLNDAGPLPFPVENLLQTAPCGFVVTDYAEPDHPIIYVNTVFEMVTGYRAEEVLGRNWQVGKEKQLFASYQVVSFLLVFINLLYNLLCSYISTFLTVIILYFCSRFLQCRGPFAKRRHPLVDSSVVSKITKCLEKGIEFQGELLNFRKDGSPLMNKLRLNPIYGDDDIITHVIGIQLFTEADIDLGPVSGSATKETAKSSDKFRSSLSSFRSATNGDRNVFRGVCGIFQLSDEVLSLKILSLLTPRDIASVGSVCKRFYELIENEDLWRMVCQNAWGSETTRVLESVPGAKMLGWGRLARELTTLEAAAWRKLTVGGSVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNARNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFLLDLDAKTPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPIWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTIDLSEDEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYLLDPTEEKPTWRILKVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWTLSEIHELSLASSVV 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22328374 22333022 + Bpe009901.2 Bpe02g02080 100229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02080 657 Gene3D PAS domain 23 205 - -
Bpe02g02080 657 SUPERFAMILY Galactose oxidase, central domain 327 643 IPR011043 -
Bpe02g02080 657 SUPERFAMILY F-box domain 235 306 IPR036047 GO:0005515
Bpe02g02080 657 CDD PAS 37 76 IPR000014 -
Bpe02g02080 657 Pfam Galactose oxidase, central domain 405 452 - -
Bpe02g02080 657 PANTHER ADAGIO PROTEIN 1-LIKE 96 656 - -
Bpe02g02080 657 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 96 656 - -
Bpe02g02080 657 ProSiteProfiles F-box domain profile. 256 289 IPR001810 GO:0005515
Bpe02g02080 657 Pfam PAS domain 139 193 IPR000014 -
Bpe02g02080 657 Pfam PAS domain 38 76 IPR000014 -
Bpe02g02080 657 Gene3D - 243 289 - -
Bpe02g02080 657 Pfam F-box-like 253 291 IPR001810 GO:0005515
Bpe02g02080 657 ProSiteProfiles PAS repeat profile. 30 75 IPR000014 -
Bpe02g02080 657 Pfam Kelch motif 498 549 IPR011498 GO:0005515
Bpe02g02080 657 Pfam Kelch motif 565 612 IPR011498 GO:0005515
Bpe02g02080 657 Gene3D - 498 655 IPR015915 GO:0005515
Bpe02g02080 657 Gene3D - 319 493 IPR015915 GO:0005515
Bpe02g02080 657 SUPERFAMILY PYP-like sensor domain (PAS domain) 32 77 IPR035965 -
Bpe02g02080 657 Pfam Galactose oxidase, central domain 341 391 - -
Bpe02g02080 657 SUPERFAMILY PYP-like sensor domain (PAS domain) 131 194 IPR035965 -
Bpe02g02080 657 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 86 - -
Bpe02g02080 657 PANTHER ADAGIO PROTEIN 1-LIKE 1 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02080 K12115 ZTL; clock-associated PAS protein ZTL - csv:101222265 1108.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g02080 Bpe13g01219 CCT
Bpe02g02080 Bpe10g00940 CCT
Bpe02g02080 Bpe10g00940 ECH
Bpe02g02080 Bpe11g01695 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02080 Bpe-Chr2:22328374 Bpe13g01006 Bpe-Chr13:15795304 0 dispersed
Bpe09g00059 Bpe-Chr9:423058 Bpe02g02080 Bpe-Chr2:22328374 4.07E-08 transposed
Bpe13g01219 Bpe-Chr13:17515861 Bpe02g02080 Bpe-Chr2:22328374 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g289 . . . . . Bpe10g00940 . Bma15g00084 . Cmo18g01044 . Cma18g01031 . Car18g00954 Sed06g1874 Cpe09g00289 Cpe01g01779 Bhi07g01341 Tan04g0880 Cmetu10g0761 Lac13g0479 Hepe01g1205 . . Cla05g02312 . Cec05g2507 Cco05g2549 Clacu05g2480 Cmu05g2341 Cre05g2458 Cone13ag0839 . . Cone9ag0468 Lsi04g00267 Csa05g02599 Chy10g01134 Cme10g00273 Blo06g00966 . . . Bpe11g01695 Bpe02g02080 . . . Cmo04g02140 . Cma04g02037 . Car04g01983 . . . . . . . . . . . . . . . . . . . Chy09g00604 .
Vvi11g988 Blo01g00677 . Bda01g01913 . . Bpe02g02080 . . . . . . Car05g00634 . . . . . . . . . . . Cla11g01179 Cam11g1237 Cec11g1249 Cco11g1244 Clacu11g1396 Cmu11g1221 Cre11g1641 . . . . . Csa02g00639 Chy05g00898 . . . . . . Bpe13g01219 . Bma06g00908 Sed11g0551 . . . . . . Cpe11g00637 . Bhi06g01252 Tan08g0849 Cmetu05g0815 . Hepe08g2122 . . . . . . . . . Lsi11g00763 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002995 2 1 2 3 2 2 4 1 2 1 2 1 2 0 1 2 2 2 2 2 1 1 1 1 2 2 1 2 1 2 50