Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02185 ATGGACGGAGCAGCTGCTTACAACCCCCGAACTGTGGAAGAGGTTTTCAAGGATTTTAGGGGCCGTCGAGCCGGCATGATCAAAGCTCTCACCACTGACGTCGAAGAATTTTATCAGCGGTGCGATCCTGAGAAGGAAAACCTTTGCCTTTATGGACTTCCTAATGAGCAGTGGGAAGTTAATTTGCCAGCTGAAGAAGTGCCTCCGGAGCTGCCTGAGCCTGCATTAGGTATTAACTTTGCTAGAGATGGGATGGAAGAGAAAGACTGGTTGTCCCTGGTTGCTGTTCACAGTGATGCATGGTTATTTTCAGTGGCTTTTTATTTTGGTTCCAGATTTGGTTTCGATAAAGCTGACAGGAAACGTCTGTTCACGATGATAAATGATTTGCCCACAATATTCGAGGTGGTGACTGGAAGTGGGAAGAAACAGGGAAAGGAGAAGTCATCCATTTCAAATCATAGCAGAAATAAATCTAAGTCAGGCTCAAAAGGGAGAGGTTCAAAGGGGTTGTCGAAAGAAGAGGAAGAAGAGTTAGAAGAAGCTGATGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGCATGGGGAGACCTTATGTGGGGCATGTGGAGATAACTATGCATCGGATGAGTTCTGGATTTGTTGTGACATTTGCGAGAAGTGGTTTCATGGCAAATGCGTAAAGATAACTCCCGCAAGGGCCGAGCACATCAAGCAATATAAGTGCCCTTCTTGCAGCAACAAGAGAGCTCGGCCCTGA 759 46.9 MDGAAAYNPRTVEEVFKDFRGRRAGMIKALTTDVEEFYQRCDPEKENLCLYGLPNEQWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDAWLFSVAFYFGSRFGFDKADRKRLFTMINDLPTIFEVVTGSGKKQGKEKSSISNHSRNKSKSGSKGRGSKGLSKEEEEELEEADEEEEEEEEEEHGETLCGACGDNYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23047068 23049899 - Bpe010002.1 Bpe02g02185 100334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02185 252 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 174 193 IPR003903 -
Bpe02g02185 252 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 252 - -
Bpe02g02185 252 MobiDBLite consensus disorder prediction 176 195 - -
Bpe02g02185 252 SMART PHD_3 198 246 IPR001965 -
Bpe02g02185 252 Coils Coil 168 196 - -
Bpe02g02185 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Bpe02g02185 252 CDD PHD_AL_plant 198 248 IPR044104 -
Bpe02g02185 252 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Bpe02g02185 252 MobiDBLite consensus disorder prediction 141 196 - -
Bpe02g02185 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 247 IPR013083 -
Bpe02g02185 252 PANTHER CPG BINDING PROTEIN 3 252 IPR045104 GO:0006355|GO:0042393
Bpe02g02185 252 Pfam PHD-finger 199 248 IPR019787 -
Bpe02g02185 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Bpe02g02185 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00502 Bpe-Chr2:3263991 Bpe02g02185 Bpe-Chr2:23047068 2.60E-91 dispersed
Bpe02g02185 Bpe-Chr2:23047068 Bpe14g00276 Bpe-Chr14:2783384 7.25E-129 dispersed
Bpe05g00728 Bpe-Chr5:20777447 Bpe02g02185 Bpe-Chr2:23047068 1.09E-113 transposed
Bpe01g00604 Bpe-Chr1:3979265 Bpe02g02185 Bpe-Chr2:23047068 1.41E-49 wgd
Bpe13g01240 Bpe-Chr13:17643801 Bpe02g02185 Bpe-Chr2:23047068 1.39E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21036 PF12165 Alfin 3.80E-69 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02185 - - cpap:110817645 424.476