Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g02219 ATGATGCTCGGTGAACCCTACCCTTCCGGCGTATCGACGTGGTTGGTGAGCGATTATGATTCGGTGACTGAAATTTTATCTCCTTTTGGAAGATCTGTCCGCTGCCACAGCAATGCGAATGGAGGAGACTACTCTCCTCAAGAAGCTTACACGGGGCTGCAGCGCTACTTGCCTTCCAATGAACGGGACAGTGATATTTCTGGTCGGGAAATGGATTCTACCGTCGACGCCTACTCCTGCGACCAGTTCCGGATGTTTGAGTTCAAGGTGAGGAGGTGCGCTAGAGGAAGGTCTCATGATTGGACTGAGTGTCCGTACGCTCATCCGGGAGAGAAGGCCCGCCGGAGAGATCCGACGAAGTATCACTACTCTGGTACTGCATGTGCGGATTTTCGAAAAGGAAGTTGCAAGAAAGGCGATTCGTGCGAGTTCTCTCATGGTGTTTTCGAGTGCTGGCTTCACCCGGCGCGTTACCGGACTCAGCCGTGCAAAGACGGAACGAGCTGCCGGCGAAGGGTTTGTTTCTTCGCTCACACGGCGGAACAACTTCGACTTTTACCTCATCAGAGTCTGAAGAGTCCAAACGCCGCTGCTTACTCGTACGACGGTTCACCTCTCCGGCATGCCATTGAGGCGTCGAGTGCAAAAAATTTAACGTTTTTGTCTTCTCCGACGAGTTCACCCCCGATGACTCCTCAGGCAGAATCTCCGCCTATGTCGCCAATGGCTCAGTCGCTTAGCCGGTCTTTCGGATTGAATTCAGTTGGAGAAATGGCGGCTTCTCTACGAAACCTCCAGATTAGCAAATTAAAGTCCCTTCCCTCTGCTTGGAATGTCCAAATAGGATCTCCGAGAGGTTCGATCCTTCGACCTGACGGGTGCAGCCTACCTGCGACGCCAACTCGAGCTTCTCCTCGTTCCGTTAATGGCGGATATGTTGATTTCTGGGACCAAACTGTGGAGGAGGAGCCAGCGATGGAGAGGGTAGAATCAGGGAGAGGACTCAGAGCTAAAATGTTTGAGAAACTGAGAAAGGAAAACTTCACTAATGAAGCCCATCCCGATTCATCGTCTGCTGCACCGGACGTGGGTTGGATTTCAGAGCTGGTGCAGTAA 1116 52.24 MMLGEPYPSGVSTWLVSDYDSVTEILSPFGRSVRCHSNANGGDYSPQEAYTGLQRYLPSNERDSDISGREMDSTVDAYSCDQFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPTKYHYSGTACADFRKGSCKKGDSCEFSHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTAEQLRLLPHQSLKSPNAAAYSYDGSPLRHAIEASSAKNLTFLSSPTSSPPMTPQAESPPMSPMAQSLSRSFGLNSVGEMAASLRNLQISKLKSLPSAWNVQIGSPRGSILRPDGCSLPATPTRASPRSVNGGYVDFWDQTVEEEPAMERVESGRGLRAKMFEKLRKENFTNEAHPDSSSAAPDVGWISELVQ 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23235449 23236564 - Bpe010036.1 Bpe02g02219 100368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g02219 371 PANTHER UNKEMPT FAMILY MEMBER 10 371 IPR045234 -
Bpe02g02219 371 SMART c3hfinal6 157 180 IPR000571 GO:0046872
Bpe02g02219 371 SMART c3hfinal6 122 148 IPR000571 GO:0046872
Bpe02g02219 371 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 10 371 - -
Bpe02g02219 371 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 147 IPR000571 GO:0046872
Bpe02g02219 371 ProSiteProfiles Zinc finger C3H1-type profile. 123 149 IPR000571 GO:0046872
Bpe02g02219 371 MobiDBLite consensus disorder prediction 221 246 - -
Bpe02g02219 371 Gene3D - 118 188 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g02219 Bpe13g01268 CCT
Bpe02g02219 Bpe13g01268 ECH
Bpe01g00577 Bpe02g02219 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00475 Bpe-Chr2:3085436 Bpe02g02219 Bpe-Chr2:23235449 9.42E-98 dispersed
Bpe02g01775 Bpe-Chr2:20086533 Bpe02g02219 Bpe-Chr2:23235449 3.38E-123 dispersed
Bpe02g02219 Bpe-Chr2:23235449 Bpe04g01472 Bpe-Chr4:21301267 7.23E-61 dispersed
Bpe01g00577 Bpe-Chr1:3758965 Bpe02g02219 Bpe-Chr2:23235449 1.99E-113 wgd
Bpe13g01268 Bpe-Chr13:17880145 Bpe02g02219 Bpe-Chr2:23235449 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21042 PF00642 zf-CCCH 2.90E-05 CL0537 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g02219 - - qsu:112010421 502.671